Pairwise Orthologs for PHAAN13078

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene PHAAN13078 (A0A0L9T3E6)

E Phaseolus angularis | Protein TIME FOR COFFEE

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Gadus morhua	GADMO24785		A0A8C5APK5
			E	Xenopus tropicalis	XENTR06326		A0A8J1J3F5
			E	Cucumis sativus	CUCSA22992		A0A0A0K8W1
			E	Phaseolus vulgaris	PHAVU06061		V7CYR1
			E	Quercus lobata	QUELO02832		A0A7N2N2V9
			E	Ricinus communis	RICCO01628		XP_015575648
			E	Prunus dulcis	PRUDU04608		A0A5E4EDS9
			E	Arabis alpina	ARAAL11768		A0A087H003
			E	Brassica rapa subsp. pekinensis	BRARP14005		M4FH58
			E	Arabidopsis lyrata	ARALY19673		fgenesh2_kg.5__2812_
			E	Arabidopsis thaliana	ARATH25106		F4J0W8
			E	Theobroma cacao	THECC02786		A0A061DPY4
			E	Corchorus capsularis	COCAP04171		A0A1R3I538
			E	Gossypium arboreum	GOSAR33975		A0A0B0PXA9
			E	Gossypium raimondii	GOSRA52489		A0A0D2R6F9
			E	Citrus clementina	CITCL04908		V4TAH2
			E	Vitis vinifera	VITVI02916		CBI26227
			E	Populus trichocarpa	POPTR40111		Potri.005G210200.2.v
			E	Populus trichocarpa	POPTR30766		Potri.002G052300.3.v
			E	Gossypium hirsutum	GOSHI65607		Gh_A12G2523
			E	Gossypium hirsutum	GOSHI56202		XP_016717637

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