Pairwise Orthologs for BRARP14005

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene BRARP14005 (M4FH58)

E Brassica rapa subsp. pekinensis | Protein TIME FOR COFFEE

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Kalanchoe fedtschenkoi	KALFE36252		A0A7N0SYF7
			E	Cucumis sativus	CUCSA22992		A0A0A0K8W1
			E	Medicago truncatula	MEDTR11586		AES60889
			E	Cajanus cajan	CAJCA28807		A0A151RL83
			E	Phaseolus vulgaris	PHAVU06061		V7CYR1
			E	Phaseolus angularis	PHAAN13078		A0A0L9T3E6
			E	Populus trichocarpa	POPTR40111		Potri.005G210200.2.v
			E	Prunus dulcis	PRUDU04608		A0A5E4EDS9
			E	Rosa chinensis	ROSCH15319		A0A2P6PW25
			E	Arabis alpina	ARAAL11768		A0A087H003
			E	Brassica napus	BRANA12968		BnaA04g00070D
			E	Arabidopsis lyrata	ARALY19673		fgenesh2_kg.5__2812_
			E	Arabidopsis thaliana	ARATH25106		F4J0W8
			E	Eutrema salsugineum	EUTSA27645		V4LJ48
			E	Corchorus capsularis	COCAP04171		A0A1R3I538
			E	Gossypium arboreum	GOSAR33975		A0A0B0PXA9
			E	Citrus clementina	CITCL04908		V4TAH2
			E	Gossypium hirsutum	GOSHI65607		Gh_A12G2523
			E	Gossypium hirsutum	GOSHI56202		XP_016717637

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