Pairwise Orthologs for RATNO16435

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Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene RATNO16435 (HS3S2_RAT)

E Rattus norvegicus | Heparan sulfate glucosamine 3-O-sulfotransferase 2 [Hs3st2]

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			B	Acetohalobium arabaticum (strain ATCC 49924 / DSM 5501 / Z-7288)	ACEAZ02049		WP_013279050
			B	Bradyrhizobium sp. (strain ORS 278)	BRASO04891		BRADO5188
			B	Nitrosococcus halophilus (strain Nc4)	NITHN03092		WP_013034211
			E	Lepisosteus oculatus	LEPOC03712		W5M8G8
			E	Anguilla anguilla	ANGAN07829		XP_035259043
			E	Anabas testudineus	ANATE28404		A0A3Q1HL70
			E	Seriola dumerili	SERDU13122		A0A3B4V5S2
			E	Echeneis naucrates	ECHNA49181		A0A665VDQ2
			E	Cynoglossus semilaevis	CYNSE12106		A0A3P8VC23
			E	Dicentrarchus labrax	DICLA47561		A0A8P4GPY2
			E	Gasterosteus aculeatus	GASAC08484		G3PLM7
			E	Sparus aurata	SPAAU00307		A0A671UIL8
			E	Mola mola	MOLML16634		A0A3Q3X305
			E	Takifugu rubripes	TAKRU42884		H2U4F2
			E	Tetraodon nigroviridis	TETNG10070		H3DML9
			E	Oryzias javanicus	ORYJA49359		A0A3S2P9A7
			E	Oryzias latipes	ORYLA16528		A0A3B3IH73
			E	Oryzias melastigma	ORYME17835		A0A3B3B4I2
			E	Nothobranchius furzeri	NOTFU08067		A0A1A8UB30
			E	Kryptolebias marmoratus	KRYMA19755		A0A3Q3GQT1
			E	Cyprinodon variegatus	CYPVA05060		A0A3Q2D5C8
			E	Gambusia affinis	GAMAF14657		ENSGAFG00000018002.1
			E	Poecilia formosa	POEFO10602		A0A087Y0Z4
			E	Poecilia reticulata	POERE31913		A0A3P9NQJ8
			E	Xiphophorus maculatus	XIPMA10345		A0A3B5PZD6

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