Pairwise Orthologs for NITHN03092

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Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene NITHN03092 (WP_013034211)

B Nitrosococcus halophilus (strain Nc4)

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			B	Kytococcus sedentarius (strain ATCC 14392 / DSM 20547 / CCM 314 / 541)	KYTSD01754		WP_015779810
			B	Salinibacter ruber (strain DSM 13855 / M31)	SALRD00966		SRU_1000
			B	Salinibacter ruber (strain M8)	SALRM01189		SRM_01196
			B	Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6)	SYNP201482		SYNPCC7002_A1508
			B	Synechococcus sp. (strain CC9902)	SYNS900448		Syncc9902_0455
			B	Synechococcus sp. (strain ATCC 29403 / PCC 7335)	SYNS701658		EDX84828
			B	Persicimonas caeni	PERCE02833		FIV42_14600
			B	Rhodovulum sulfidophilum	RHOSU04392		BAQ71653
			B	Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003)	RHOCB00165		WP_013065913
			B	Hahella chejuensis (strain KCTC 2396)	HAHCH02580		WP_011396584
			E	Gasterosteus aculeatus	GASAC01986		G3NCR9
			E	Mola mola	MOLML22903		A0A3Q4BY72
			E	Oryzias javanicus	ORYJA49537		ENSOJAG00000011000.1
			E	Gambusia affinis	GAMAF06966		ENSGAFG00000014526.1
			E	Oreochromis aureus	OREAU49814		A0A668RU09
			E	Cyprinus carpio carpio	CYPCA106495		A0A9J8BL48
			E	Loxodonta africana	LOXAF05451		G3SW88
			E	Fukomys damarensis	FUKDA12533		ENSFDAG00000013618.1
			E	Heterocephalus glaber	HETGA20998		G5BY60
			E	Jaculus jaculus	JACJA22230		A0A8C5P3J8
			E	Mus musculus	MOUSE56417		HS3S2_MOUSE
			E	Rattus norvegicus	RATNO16435		HS3S2_RAT
			E	Colobus angolensis palliatus	COLAP40179		A0A2K5I2W5
			E	Pan paniscus	PANPA14416		A0A2R9A8E4
			E	Saimiri boliviensis boliviensis	SAIBB17108		A0A2K6V225

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