Pairwise Orthologs for POPTR50475

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene POPTR50475 (Potri.009G122500.2.v)

E Populus trichocarpa

‹

Loading, please wait...

Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Nelumbo nucifera	NELNU17751		A0A1U8AE93
			E	Tetracentron sinense	TETSI08429		A0A834ZJA5
			E	Quercus lobata	QUELO01804	1:1	A0A7N2MXY7
			E	Ricinus communis	RICCO25125	1:1	XP_048233777
			E	Prunus dulcis	PRUDU21078	1:1	A0A5E4FSM5
			E	Prunus persica	PRUPE04028	1:1	M5W1H3
			E	Brassica rapa subsp. pekinensis	BRARP24399		M4EXQ9
			E	Brassica napus	BRANA22962		A0A078G7C7
			E	Arabidopsis lyrata	ARALY23985		fgenesh2_kg.7__106__
			E	Arabidopsis thaliana	ARATH31275		A0A654FWU6
			E	Manihot esculenta	MANES01329	1:n	A0A2C9W0Q3
			E	Manihot esculenta	MANES01330	1:n	cassava4.1_013584m
			E	Cucumis sativus	CUCSA21349	1:1	A0A0A0K2C3
			E	Rosa chinensis	ROSCH13167	1:1	A0A2P6PPV0

Showing 1 to 14 of 14 rows rows per page