Pairwise Orthologs for ARATH31275

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Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene ARATH31275 (A0A654FWU6)

E Arabidopsis thaliana | At4g39040 | CRM domain-containing protein [CFM4]

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Kalanchoe fedtschenkoi	KALFE02000	1:1	A0A7N0T893
			E	Coffea canephora	COFCA05306		A0A068TM32
			E	Quercus lobata	QUELO01804		A0A7N2MXY7
			E	Ricinus communis	RICCO25125		XP_048233777
			E	Manihot esculenta	MANES01329		A0A2C9W0Q3
			E	Populus trichocarpa	POPTR50475		Potri.009G122500.2.v
			E	Arabis alpina	ARAAL16594	1:1	A0A087GKT7
			E	Brassica rapa subsp. pekinensis	BRARP24399	1:1	M4EXQ9
			E	Brassica oleracea var. oleracea	BRAOL41826	1:1	A0A0D3DIE3
			E	Arabidopsis lyrata	ARALY23985	1:1	fgenesh2_kg.7__106__
			E	Eutrema salsugineum	EUTSA02924	1:1	V4M9Z0
			E	Gossypium arboreum	GOSAR16451		A0A0B0MZS4
			E	Gossypium raimondii	GOSRA52994		A0A0D2SZK9
			E	Vitis vinifera	VITVI19995	1:1	A0A438I9J8
			E	Selaginella moellendorffii	SELML32365		D8QN79
			E	Brassica napus	BRANA22962	1:n	A0A078G7C7
			E	Brassica napus	BRANA79146	1:n	A0A816NDM0
			E	Gossypium hirsutum	GOSHI24557		A0A1U8LME5
			E	Gossypium hirsutum	GOSHI56443		A0A1U8N8T5
			E	Persea americana	PERAE24771		MRB53_024828
			E	Eucalyptus grandis	EUCGR25389		A0A059BDV2

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