Sequences for MOUSE09043

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Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
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For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
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There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

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To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

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Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene MOUSE09043 (Q9D1E1)

E Mus musculus | ISG12a protein [Ifi27]

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Orthologs 16

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 1
Gene information
GO Annotations
Sequences/Isoforms 6
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	MOUSE09040	250			5	E9Q1C5
	MOUSE09041	165			3	Q70LM9
	MOUSE09042	205			4	Q70LN0
	MOUSE09044	260			6	Q8C6G0
	MOUSE09045	105			3	D3Z4L8
	MOUSE09043 reference isoform	215			5	Q9D1E1

Protein Sequence

Download: Fasta

MAFSGTGTLV ASIVSKMTSS AAMVKAGGAV SGTILAGSKG LILLTQSALG SATSALGALK    60
VGTILSGFSA STLAASPIGA KAVVAVLGGA MTVAAVPPAL SAVGFTASGI AASSLAAKMM   120
SLSAIANGGG VPAGGLVAIL QSAGAAGLSV PSTVIVGSAG SAVVASVMNI CESFYPFLMG   180
SEVADMATEV ADMAIEVADI STEEALPNLS NTEKD                              215

cDNA Sequence

Download: Fasta

ATGGCGTTTT CGGGCACAGG GACACTGGTG GCTTCCATTG TCTCCAAGAT GACATCTTCA    60
GCAGCCATGG TCAAAGCTGG AGGGGCAGTC TCTGGCACCA TTCTAGCTGG TTCGAAGGGG   120
CTCATCCTGT TAACACAGAG TGCCCTGGGC TCTGCAACAT CTGCACTTGG AGCACTGAAG   180
GTTGGCACCA TTTTATCTGG GTTCTCTGCC TCCACCTTGG CTGCTTCCCC CATTGGAGCC   240
AAGGCTGTTG TGGCTGTGCT TGGGGGAGCC ATGACAGTAG CTGCTGTACC ACCTGCGCTG   300
AGTGCTGTGG GCTTCACCGC CTCAGGAATT GCAGCCTCCT CTCTAGCAGC TAAGATGATG   360
TCCTTGTCAG CTATTGCTAA TGGGGGTGGA GTCCCAGCTG GTGGCCTGGT GGCCATTCTG   420
CAGTCTGCTG GAGCTGCTGG ACTCTCCGTG CCATCTACTG TCATCGTGGG CTCTGCAGGG   480
TCTGCCGTTG TGGCCAGTGT CATGAACATC TGTGAGAGTT TCTACCCTTT TCTCATGGGA   540
TCAGAGGTGG CAGACATGGC GACAGAGGTG GCAGATATGG CGATAGAGGT GGCAGACATT   600
TCAACAGAAG AGGCACTGCC CAACTTGTCT AACACAGAGA AGGATTAA                648