Sequences for HUMAN20338

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene HUMAN20338 (PLGF_HUMAN)

E Homo sapiens | Placenta growth factor [PGF]

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Orthologs 148

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 3
Gene information
GO Annotations
Sequences/Isoforms 4
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	HUMAN20339	149			6	PLGF_HUMAN
	HUMAN20340	169			7	G3XA84
	HUMAN20341	221			7	PLGF_HUMAN
	HUMAN20338 reference isoform	170			7	PLGF_HUMAN

Protein Sequence

Download: Fasta

MPVMRLFPCF LQLLAGLALP AVPPQQWALS AGNGSSEVEV VPFQEVWGRS YCRALERLVD    60
VVSEYPSEVE HMFSPSCVSL LRCTGCCGDE NLHCVPVETA NVTMQLLKIR SGDRPSYVEL   120
TFSQHVRCEC RPLREKMKPE RRRPKGRGKR RREKQRPTDC HLCGDAVPRR              170

cDNA Sequence

Download: Fasta

ATGCCGGTCA TGAGGCTGTT CCCTTGCTTC CTGCAGCTCC TGGCCGGGCT GGCGCTGCCT    60
GCTGTGCCCC CCCAGCAGTG GGCCTTGTCT GCTGGGAACG GCTCGTCAGA GGTGGAAGTG   120
GTACCCTTCC AGGAAGTGTG GGGCCGCAGC TACTGCCGGG CGCTGGAGAG GCTGGTGGAC   180
GTCGTGTCCG AGTACCCCAG CGAGGTGGAG CACATGTTCA GCCCATCCTG TGTCTCCCTG   240
CTGCGCTGCA CCGGCTGCTG CGGCGATGAG AATCTGCACT GTGTGCCGGT GGAGACGGCC   300
AATGTCACCA TGCAGCTCCT AAAGATCCGT TCTGGGGACC GGCCCTCCTA CGTGGAGCTG   360
ACGTTCTCTC AGCACGTTCG CTGCGAATGC CGGCCTCTGC GGGAGAAGAT GAAGCCGGAA   420
AGGAGGAGAC CCAAGGGCAG GGGGAAGAGG AGGAGAGAGA AGCAGAGACC CACAGACTGC   480
CACCTGTGCG GCGATGCTGT TCCCCGGAGG TAA                                513