Sequences for HUMAN11820

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Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

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Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene HUMAN11820 (PTHR_HUMAN)

E Homo sapiens | Parathyroid hormone-related protein [PTHLH]

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Orthologs 192

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs
Gene information
GO Annotations
Sequences/Isoforms 9
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	HUMAN11819 reference isoform	177			3	PTHR_HUMAN
	HUMAN11821	177			3	PTHR_HUMAN
	HUMAN11822	209			3	PTHR_HUMAN
	HUMAN11823	175			2	PTHR_HUMAN
	HUMAN11824	175			2	PTHR_HUMAN
	HUMAN11825	175			2	PTHR_HUMAN
	HUMAN11826	172			2	F5GZD9
	HUMAN11827	111			3	F5H485
	HUMAN11820	177			3	PTHR_HUMAN

Protein Sequence

Download: Fasta

MQRRLVQQWS VAVFLLSYAV PSCGRSVEGL SRRLKRAVSE HQLLHDKGKS IQDLRRRFFL    60
HHLIAEIHTA EIRATSEVSP NSKPSPNTKN HPVRFGSDDE GRYLTQETNK VETYKEQPLK   120
TPGKKKKGKP GKRKEQEKKK RRTRSAWLDS GVTGSGLEGD HLSDTSTTSL ELDSRRH      177

cDNA Sequence

Download: Fasta

ATGCAGCGGA GACTGGTTCA GCAGTGGAGC GTCGCGGTGT TCCTGCTGAG CTACGCGGTG    60
CCCTCCTGCG GGCGCTCGGT GGAGGGTCTC AGCCGCCGCC TCAAAAGAGC TGTGTCTGAA   120
CATCAGCTCC TCCATGACAA GGGGAAGTCC ATCCAAGATT TACGGCGACG ATTCTTCCTT   180
CACCATCTGA TCGCAGAAAT CCACACAGCT GAAATCAGAG CTACCTCGGA GGTGTCCCCT   240
AACTCCAAGC CCTCTCCCAA CACAAAGAAC CACCCCGTCC GATTTGGGTC TGATGATGAG   300
GGCAGATACC TAACTCAGGA AACTAACAAG GTGGAGACGT ACAAAGAGCA GCCGCTCAAG   360
ACACCTGGGA AGAAAAAGAA AGGCAAGCCC GGGAAACGCA AGGAGCAGGA AAAGAAAAAA   420
CGGCGAACTC GCTCTGCCTG GTTAGACTCT GGAGTGACTG GGAGTGGGCT AGAAGGGGAC   480
CACCTGTCTG ACACCTCCAC AACGTCGCTG GAGCTCGATT CACGGAGGCA TTGA         534