Sequences for DIPOR20180

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene DIPOR20180 (ENSDORG00000011479.2)

E Dipodomys ordii

‹

Orthologs 55

Required orthology evidence:

OMA pairs ?

HOG ?

OMA Group ?
Paralogs 2
Gene information
GO Annotations
Sequences/Isoforms 1
Local synteny

	Protein ID	Sequence length	Exons	Domain Architectures	Number exons	Cross reference
	DIPOR20180 reference isoform	313			3	ENSDORG00000011479.2

Protein Sequence

Download: Fasta

IYEDTHARSG QDLGKLFHRL RVGSSPNLLS SPLLARRPPL PEMVAVLLAG GSGARVGTVP    60
GAWLCLMALL QLLGSAPRGS GLAHGRRLIC WQALLQCQGE PECSYAYNQY AEACAPVLAQ   120
RGGGEVMGCV EARRRCERDS RCNLALNRYL TYCGKLFNGL RCTDECRTVI EDMLAVPKAA   180
LLNDCVCDGL ERPICESVKE NMARLCFGAD LGNGPGSSGS DGGLDDYYDE EYDEEPRLGG   240
AGSEQPLDDD DGVPHAPRPG GGAAAAAAGG RGEPPYGPGR RSVSGGGGRA VSRGAGTPLA   300
SILLLLLGRG LDL                                                      313

cDNA Sequence

Download: Fasta

ATTTATGAAG ACACTCATGC AAGAAGTGGG CAGGACTTGG GCAAACTTTT CCACCGGCTC    60
CGCGTCGGCA GCTCCCCGAA TCTCCTCTCC TCTCCTCTCC TCGCCCGGCG GCCGCCGCTG   120
CCCGAGATGG TGGCCGTGCT GCTGGCCGGC GGCAGCGGGG CCCGCGTGGG GACCGTGCCG   180
GGCGCCTGGC TGTGCTTGAT GGCGTTGCTG CAGCTGCTGG GATCGGCGCC GCGGGGCTCC   240
GGGCTGGCGC ACGGCCGCCG CCTCATCTGC TGGCAGGCGC TGCTGCAGTG CCAGGGGGAG   300
CCGGAGTGCA GCTACGCCTA CAACCAGTAC GCCGAGGCGT GCGCGCCGGT GCTGGCGCAG   360
CGCGGCGGGG GCGAGGTCAT GGGCTGCGTG GAGGCCCGGC GACGCTGCGA GCGCGACAGC   420
CGCTGCAACC TGGCGCTCAA CCGCTACCTG ACCTACTGCG GCAAGCTCTT CAACGGGCTG   480
CGCTGCACGG ACGAGTGCCG CACGGTCATC GAGGACATGC TGGCCGTGCC CAAGGCGGCG   540
CTGCTCAACG ACTGCGTGTG CGACGGCCTG GAGCGGCCCA TCTGTGAGTC GGTCAAGGAG   600
AACATGGCCC GCTTGTGCTT CGGCGCCGAT CTGGGCAACG GCCCCGGCAG CAGCGGCTCG   660
GACGGGGGCT TGGACGACTA CTACGACGAA GAGTACGACG AGGAGCCTCG CCTCGGCGGG   720
GCGGGCAGCG AACAGCCGCT GGACGACGAC GACGGAGTCC CGCACGCCCC GCGCCCGGGC   780
GGCGGCGCTG CTGCGGCGGC GGCGGGTGGC CGCGGGGAGC CGCCCTACGG GCCCGGGCGC   840
CGAAGCGTCA GCGGAGGCGG CGGCCGCGCG GTGTCCCGAG GCGCCGGGAC CCCGCTCGCC   900
TCCATCTTGC TGCTGCTGCT CGGGCGGGGT TTAGACTTGN NN                      942