Related genomes of genome SULMC based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

SULMC - Sulcia muelleri (strain CARI)

Proteome version: 20-JAN-2011 (Rel. 107, Last updated, Version 2) with 246 proteins.

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Genome information
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Gene Order
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	FLABF	Flavobacterium branchiophilum (strain FL-15)	171
2	FLASC	Flavobacterium sp. (strain CF136)	168
3	FORAG	Formosa agariphila (strain DSM 15362 / KCTC 12365 / LMG 23005 / KMM 3901 / M-2Alg 35-1)	168
4	CELAD	Cellulophaga algicola (strain DSM 14237 / IC166 / ACAM 630)	167
5	LEAB4	Leadbetterella byssophila (strain DSM 17132 / JCM 16389 / KACC 11308 / NBRC 106382 / 4M15)	167
6	BLASP	Blattabacterium sp. subsp. Periplaneta americana (strain BPLAN)	167
7	BLASB	Blattabacterium sp. subsp. Blattella germanica (strain Bge)	167
8	GRAFK	Gramella forsetii (strain KT0803)	166
9	ZUNPS	Zunongwangia profunda (strain DSM 18752 / CCTCC AB 206139 / SM-A87)	166
10	SOLCM	Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D)	166

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	RALSL	Ralstonia solanacearum	1
2	TRYCI	Trypanosoma congolense (strain IL3000)	5
3	MEGSC	Megaselia scalaris	6
4	VITCO	Vittaforma corneae (strain ATCC 50505)	7
5	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	8
6	EDHAE	Edhazardia aedis (strain USNM 41457)	8
7	GIAIC	Giardia intestinalis (strain ATCC 50803 / WB clone C6)	8
8	ENTBH	Enterocytozoon bieneusi (strain H348)	8
9	NEMS1	Nematocida sp. 1 (strain ERTm2 / ATCC PRA-371)	9
10	GIAIA	Giardia intestinalis (strain P15)	9