Related genomes of genome SPRLO based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

SPRLO - Spraguea lophii (strain 42_110)

Proteome version: Ensembl Fungi 56; Sprlop1.0; GCA_000430065.1 with 2499 proteins.

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Genome information
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Gene Order
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	VAVCU	Vavraia culicis (isolate floridensis)	788
2	ENCCU	Encephalitozoon cuniculi (strain GB-M1)	700
3	TRAHO	Trachipleistophora hominis	693
4	NOSCE	Nosema ceranae (strain BRL01)	594
5	NOSB1	Nosema bombycis (strain CQ1 / CVCC 102059)	593
6	VITCO	Vittaforma corneae (strain ATCC 50505)	563
7	EDHAE	Edhazardia aedis (strain USNM 41457)	555
8	NEMP3	Nematocida parisii (strain ERTm3)	467
9	NEMS1	Nematocida sp. 1 (strain ERTm2 / ATCC PRA-371)	448
10	ENTBH	Enterocytozoon bieneusi (strain H348)	405

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	RALSL	Ralstonia solanacearum	4
2	ZINIC	Zinderia insecticola (strain CARI)	4
3	UC116	Patescibacteria group bacterium E44_bin74	8
4	TRYVY	Trypanosoma vivax (strain Y486)	10
5	MYCWM	Mycoplasma wenyonii (strain Massachusetts)	11
6	SULMC	Sulcia muelleri (strain CARI)	11
7	UC130	Candidatus Omnitrophica bacterium B17_G2	11
8	UC050	Candidatus Marinimicrobia bacterium BS150m-G59	11
9	UC136	bacterium UBA9089	11
10	UC077	Candidatus Microgenomates bacterium NC_groundwater_396_Ag_B-0.1um_42_16	12