Related genomes of genome PROLT based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

PROLT - Protomyces lactucaedebilis

Proteome version: Ensembl Fungi 48; Prola1 with 6725 proteins.

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Genome information
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Gene Order
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	AURPU	Aureobasidium pullulans	2371
2	AURSE	Aureobasidium subglaciale (strain EXF-2481)	2370
3	ZYMTR	Zymoseptoria tritici	2340
4	ZYMTI	Zymoseptoria tritici (strain CBS 115943 / IPO323)	2339
5	COLGR	Colletotrichum graminicola	2314
6	DOTSN	Dothistroma septosporum (strain NZE10 / CBS 128990)	2291
7	PESFW	Pestalotiopsis fici (strain W106-1 / CGMCC3.15140)	2287
8	NECHA	Nectria haematococca	2282
9	FUSV7	Fusarium vanettenii (strain ATCC MYA-4622 / CBS 123669 / FGSC 9596 / NRRL 45880 / 77-13-4)	2280
10	ALTAL	Alternaria alternata	2270

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	RALSL	Ralstonia solanacearum	17
2	TRYVY	Trypanosoma vivax (strain Y486)	23
3	UC116	Patescibacteria group bacterium E44_bin74	29
4	UC087	Candidatus Pacebacteria bacterium LF-bin-483	35
5	MYCWM	Mycoplasma wenyonii (strain Massachusetts)	35
6	UC179	candidate division Kazan bacterium GW2011_GWA1_50_15 none	35
7	ZINIC	Zinderia insecticola (strain CARI)	36
8	MYCHA	Mycoplasma haemolamae (strain Purdue)	36
9	UC077	Candidatus Microgenomates bacterium NC_groundwater_396_Ag_B-0.1um_42_16	37
10	UC105	Patescibacteria group bacterium Baikal-deep-G193	38