Related genomes of genome ENTNP based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

ENTNP - Entamoeba nuttalli (strain P19)

Proteome version: Ensembl Protists 31; ENU1_v1; 18-FEB-2016 with 6177 proteins.

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Genome information
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Gene Order
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	ENTH1	Entamoeba histolytica (strain ATCC 30459 / HM-1:IMSS / ABRM)	5471
2	ENTHI	Entamoeba histolytica	5461
3	ENTDS	Entamoeba dispar (strain ATCC PRA-260 / SAW760)	5017
4	WHEAT	Triticum aestivum	966
5	BRANA	Brassica napus	934
6	SALTR	Salmo trutta	927
7	SALSA	Salmo salar	897
8	GOSHI	Gossypium hirsutum	873
9	TOBAC	Nicotiana tabacum	824
10	SINGR	Sinocyclocheilus grahami	821

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	RALSL	Ralstonia solanacearum	5
2	ZINIC	Zinderia insecticola (strain CARI)	7
3	MYCWM	Mycoplasma wenyonii (strain Massachusetts)	8
4	UC116	Patescibacteria group bacterium E44_bin74	9
5	MYCHN	Mycoplasma haemocanis (strain Illinois)	10
6	MYCHA	Mycoplasma haemolamae (strain Purdue)	10
7	UC087	Candidatus Pacebacteria bacterium LF-bin-483	11
8	UC179	candidate division Kazan bacterium GW2011_GWA1_50_15 none	11
9	SULMC	Sulcia muelleri (strain CARI)	12
10	MYCCR	Mycoplasma conjunctivae (strain ATCC 25834 / HRC/581 / NCTC 10147)	12