Related genomes of genome AERPE based on shared OMA groups

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

AERPE - Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)

Proteome version: 17-APR-2007 (Rel. 72, Last updated, Version 74) with 1699 proteins.

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Genome information
List genes
Related Species

Based on number of:

Shared OMA groups

Shared HOGs
Gene Order
Synteny

Species with most common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	CALLD	Caldisphaera lagunensis (strain DSM 15908 / JCM 11604 / ANMR 0165 / IC-154)	688
2	PYROC	Pyrodictium occultum	660
3	ACIS3	Acidilobus saccharovorans (strain DSM 16705 / JCM 18335 / VKM B-2471 / 345-15)	658
4	HYPBU	Hyperthermus butylicus (strain DSM 5456 / JCM 9403 / PLM1-5)	637
5	PYRF1	Pyrolobus fumarii (strain DSM 11204 / 1A)	627
6	PYRAE	Pyrobaculum aerophilum (strain ATCC 51768 / DSM 7523 / JCM 9630 / CIP 104966 / NBRC 100827 / IM2)	611
7	PYROT	Pyrobaculum oguniense (strain DSM 13380 / JCM 10595 / TE7)	607
8	SULIY	Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1)	604
9	SULIM	Sulfolobus islandicus (strain M.14.25 / Kamchatka #1)	603
10	SULIK	Sulfolobus islandicus (strain M.16.4 / Kamchatka #3)	602

Species with least common OMA groups

Nb.	OMA Group	Scientific Name	Nb. orthologous group
1	TRYVY	Trypanosoma vivax (strain Y486)	5
2	RALSL	Ralstonia solanacearum	16
3	TRYCI	Trypanosoma congolense (strain IL3000)	17
4	UC087	Candidatus Pacebacteria bacterium LF-bin-483	21
5	UC116	Patescibacteria group bacterium E44_bin74	22
6	MYCWM	Mycoplasma wenyonii (strain Massachusetts)	25
7	MYCSL	Mycoplasma suis (strain Illinois)	25
8	UC179	candidate division Kazan bacterium GW2011_GWA1_50_15 none	26
9	MYCS3	Mycoplasma suis (strain KI_3806)	27
10	MONPE	Moniliophthora perniciosa (strain FA553 / isolate CP02)	27