Pairwise Orthologs for SCOMX12415

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene SCOMX12415 (ENSSMAG00000016074.1)

E Scophthalmus maximus

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Scyliorhinus torazame	SCYTO07286		A0A401NR29
			E	Chiloscyllium punctatum	CHIPU09707		A0A401SLS0
			E	Anabas testudineus	ANATE32717		A0A7N6BQT3
			E	Seriola dumerili	SERDU04997		A0A3B4VMY7
			E	Echeneis naucrates	ECHNA45801		A0A665UPD8
			E	Cynoglossus semilaevis	CYNSE27961		A0A3P8WYP9
			E	Dicentrarchus labrax	DICLA25066		A0A8C4F7Y2
			E	Gasterosteus aculeatus	GASAC03535		G3NYR5
			E	Sparus aurata	SPAAU32254		A0A671YDH3
			E	Mola mola	MOLML12400		A0A3Q3VMZ5
			E	Takifugu rubripes	TAKRU24288		H2TVL8
			E	Tetraodon nigroviridis	TETNG05475		H3DCK7
			E	Oryzias javanicus	ORYJA10489		A0A3S2P7T2
			E	Oryzias latipes	ORYLA07954		ENSORLG00000006658
			E	Oryzias melastigma	ORYME24314		A0A3B3CIW5
			E	Kryptolebias marmoratus	KRYMA12129		A0A3Q3BA74
			E	Cyprinodon variegatus	CYPVA22569		A0A3Q2CHH1
			E	Gambusia affinis	GAMAF28067		ENSGAFG00000016927.1
			E	Poecilia formosa	POEFO21668		A0A087XDN4
			E	Poecilia reticulata	POERE14395		A0A3P9QJ97
			E	Xiphophorus maculatus	XIPMA00301		M4A7H5
			E	Salarias fasciatus	SALFA42924		A0A672JSX3
			E	Haplochromis burtoni	HAPBU19218		A0A3Q2X1P4
			E	Amphilophus citrinellus	AMPCI24761		A0A3Q0SCD5
			E	Amphiprion ocellaris	AMPOC11837		A0A3Q1BU80

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