Pairwise Orthologs for SAIBB00885

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene SAIBB00885 (A0A2K6S9U5)

E Saimiri boliviensis boliviensis | Cleavage and polyadenylation specific factor 7 [CPSF7]

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Trichomonas vaginalis G3	TRIVA30238		A2FNH3
			E	Batrachochytrium dendrobatidis	BATDE07540		GP3.084190
			E	Batrachochytrium dendrobatidis (strain JAM81 / FGSC 10211)	BATDJ07540		F4PEM2
			E	Anguilla anguilla	ANGAN19688		XP_035275648
			E	Anabas testudineus	ANATE13754		A0A3Q1J8A4
			E	Echeneis naucrates	ECHNA25180		A0A665WM04
			E	Cynoglossus semilaevis	CYNSE23691		A0A3P8UM93
			E	Dicentrarchus labrax	DICLA39519		A0A8C4NSI9
			E	Sparus aurata	SPAAU24726		A0A671U2B3
			E	Mola mola	MOLML05906		A0A3Q4BPH9
			E	Oryzias javanicus	ORYJA15759		ENSOJAG00000018458.1
			E	Kryptolebias marmoratus	KRYMA02816		A0A3Q3A0J5
			E	Cyprinodon variegatus	CYPVA28770		A0A3Q2CKY0
			E	Gambusia affinis	GAMAF09489		ENSGAFG00000013787.1
			E	Xiphophorus maculatus	XIPMA27116		M3ZYJ2
			E	Oreochromis aureus	OREAU20216		A0A668TH53
			E	Amphilophus citrinellus	AMPCI20496		A0A3Q0R906
			E	Esox lucius	ESOLU03927		A0A3P8XYZ0
			E	Astyanax mexicanus	ASTMX12426		A0A8B9JBG7
			E	Pygocentrus nattereri	PYGNA24679		A0A3B4CCC9
			E	Electrophorus electricus	ELEEL02330		A0A4W4DT50
			E	Ictalurus punctatus	ICTPU01907		ENSIPUG00000017425.1
			E	Latimeria chalumnae	LATCH19019		H3A9C7
			E	Ornithorhynchus anatinus	ORNAN17606		A0A6I8P2G4
			E	Tachyglossus aculeatus	TACAU23731		XP_038620162

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