Pairwise Orthologs for RHIFE27019

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene RHIFE27019 (A0A671FXB3)

E Rhinolophus ferrumequinum | Semaphorin 3D [SEMA3D]

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Petromyzon marinus	PETMA02596		S4RIM3
			E	Chiloscyllium punctatum	CHIPU12860		A0A401SVR0
			E	Lepisosteus oculatus	LEPOC16704		W5NHZ9
			E	Anabas testudineus	ANATE22108		ENSATEG00000002438.1
			E	Seriola dumerili	SERDU10679		A0A3B4UJV1
			E	Echeneis naucrates	ECHNA53926		A0A665V8J1
			E	Scophthalmus maximus	SCOMX00914		A0A2U9BYN7
			E	Dicentrarchus labrax	DICLA41618		XP_051238483
			E	Gasterosteus aculeatus	GASAC15813		G3PGT6
			E	Sparus aurata	SPAAU43662		A0A671V7M8
			E	Mola mola	MOLML15807		A0A3Q4B0R2
			E	Takifugu rubripes	TAKRU52208		A0A674N3F0
			E	Tetraodon nigroviridis	TETNG03703		H3DPE9
			E	Oryzias javanicus	ORYJA31363		ENSOJAG00000005191.1
			E	Oryzias latipes	ORYLA15019		ENSORLG00000009459
			E	Oryzias melastigma	ORYME03744		A0A3B3BMT9
			E	Nothobranchius furzeri	NOTFU21143		A0A1A8ABU6
			E	Kryptolebias marmoratus	KRYMA03123		A0A3Q3B396
			E	Cyprinodon variegatus	CYPVA14370		A0A3Q2DPJ8
			E	Gambusia affinis	GAMAF20596		ENSGAFG00000004509.1
			E	Poecilia formosa	POEFO02705		A0A087YKV1
			E	Poecilia reticulata	POERE28375		A0A3P9PFL7
			E	Xiphophorus maculatus	XIPMA23683		M3ZPY2
			E	Salarias fasciatus	SALFA28968		A0A672IFM3
			E	Astatotilapia calliptera	ASTCA38464		A0A3P8R3J9

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