Pairwise Orthologs for RHIFE06777

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Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene RHIFE06777 (A0A671E7U7)

E Rhinolophus ferrumequinum | [Wnt protein] O-palmitoleoyl-L-serine hydrolase [NOTUM]

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			B	Deltaproteobacteria bacterium NC_groundwater_1655_Pr3_B-0.1um_70_22	U11DE01307		HY903_01885
			E	Acanthamoeba castellanii str. Neff	ACACA07932		L8H0A7
			E	Guillardia theta	GUITH24106		EKX54596
			E	Guillardia theta (strain CCMP2712)	GUITC01217		L1K167
			E	Emiliania huxleyi CCMP1516	EMIHU24769		R1DM48
			E	Monosiga brevicollis	MONBE04206		A9V0E1
			E	Spizellomyces punctatus	SPIPN02055		SPPG_02150
			E	Spizellomyces punctatus (strain DAOM BR117)	SPIPD02561		A0A0L0HNV9
			E	Branchiostoma floridae	BRAFL31460		A0A9J7M6V3
			E	Branchiostoma lanceolatum	BRALA11230		BL08884
			E	Eptatretus burgeri	EPTBU10899		A0A8C4QMI9
			E	Scyliorhinus torazame	SCYTO05877		A0A401PEC0
			E	Callorhinchus milii	CALMI08316		A0A4W3JYZ6
			E	Lepisosteus oculatus	LEPOC01925		W5N4E5
			E	Anabas testudineus	ANATE28654		A0A3Q1JUL5
			E	Seriola dumerili	SERDU16474		A0A3B4UF08
			E	Echeneis naucrates	ECHNA49401		A0A665VLU0
			E	Cynoglossus semilaevis	CYNSE12175		A0A3P8VQY2
			E	Scophthalmus maximus	SCOMX14070		A0A2U9CQW1
			E	Dicentrarchus labrax	DICLA47198		A0A8C4HBQ7
			E	Gasterosteus aculeatus	GASAC08157		G3PAS1
			E	Sparus aurata	SPAAU03227		A0A671YRA6
			E	Mola mola	MOLML16413		A0A3Q3WBK3
			E	Takifugu rubripes	TAKRU15776		A0A674MPF5
			E	Tetraodon nigroviridis	TETNG09941		H3CWL9

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