Pairwise Orthologs for RATNO38222

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Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene RATNO38222 (A0A0G2K6B2)

E Rattus norvegicus | RCG60109 | TRIO and F-actin binding protein | Trio and actin binding protein isoform 1a [Triobp]

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This entry is not the isoform used for orthologs inferences, orthologs below are inferred using the entry isoform RATNO38220.

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Bodo saltans	BODSA01784		A0A0S4IXK1
			E	Diacronema lutheri	DIALT01844		A0A8J6CGI5
			E	Aspergillus parasiticus	ASPPA12771		A0A5N6D6B4
			E	Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167)	ASPFN09017		B8N9E9
			E	Ajellomyces dermatitidis (strain ER-3 / ATCC MYA-2586)	AJEDR00063		BDCG_00060
			E	Ajellomyces capsulatus (strain H143)	AJECH00270		C6H4U9
			E	Xylona heveae (strain CBS 132557 / TC161)	XYLHT01533		A0A165IL02
			E	Sphaerulina musiva (strain SO2202)	SPHMS04427		M3BZA9
			E	Cochliobolus sativus (strain ND90Pr / ATCC 201652)	COCSN08740		M2SGH7
			E	Marssonina brunnea f. sp. multigermtubi (strain MB_m1)	MARBU01341		K1Y671
			E	Colletotrichum gloeosporioides (strain Cg-14)	COLGC01102		T0KZ98
			E	Fusarium poae	FUSPO00749		A0A1B8B264
			E	Fusarium vanettenii (strain ATCC MYA-4622 / CBS 123669 / FGSC 9596 / NRRL 45880 / 77-13-4)	FUSV707583		C7Z8P1
			E	Nectria haematococca	NECHA02582		e_gw1.20.1018.1
			E	Stachybotrys chlorohalonata (strain IBT 40285)	STAC408798		A0A084QE28
			E	Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)	CHATD03796		G0RYK2
			E	Sordaria macrospora (strain ATCC MYA-333 / DSM 997 / K(L3346) / K-hell)	SORMK08258		A0A8S8ZI36
			E	Fomitiporia mediterranea (strain MF3/22)	FOMME02956		XP_007264100
			E	Trametes pubescens	TRAPU01302		A0A1M2VM75
			E	Rhodosporidium toruloides	RHOTO05745		A0A0K3CNQ7
			E	Rhodotorula graminis (strain WP1)	RHOGW06196		A0A0P9EZP6
			E	Puccinia graminis	PUCGR11365		PGTT_11467
			E	Puccinia graminis f. sp. tritici (strain CRL 75-36-700-3 / race SCCL)	PUCGT07500		PGTG_11467
			E	Malassezia globosa (strain ATCC MYA-4612 / CBS 7966)	MALGO02520		A8Q6S8
			E	Astatotilapia calliptera	ASTCA08306		A0A3P8PI52

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