Pairwise Orthologs for RATNO38031

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene RATNO38031 (A0A9K3Y850)

E Rattus norvegicus | High mobility group AT-hook 2 [Hmga2]

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Armillaria ostoyae	ARMOS03667		A0A284QUY4
			E	Branchiostoma floridae	BRAFL13969		A0A9J7L5K3
			E	Chiloscyllium punctatum	CHIPU00865		A0A401RWF4
			E	Lepisosteus oculatus	LEPOC14279		W5NAB2
			E	Seriola dumerili	SERDU04206		A0A3B4V562
			E	Echeneis naucrates	ECHNA02990		A0A665SWR9
			E	Scophthalmus maximus	SCOMX25149		ENSSMAG00000019582.1
			E	Dicentrarchus labrax	DICLA23263		XP_051270522
			E	Nothobranchius furzeri	NOTFU16591		A0A1A7ZC03
			E	Cyprinodon variegatus	CYPVA12871		A0A3Q2CI91
			E	Gambusia affinis	GAMAF00682		ENSGAFG00000011125.1
			E	Poecilia formosa	POEFO00508		A0A087YDK0
			E	Xiphophorus maculatus	XIPMA18412		M4AQM3
			E	Astatotilapia calliptera	ASTCA32308		A0A3P8PUU7
			E	Haplochromis burtoni	HAPBU12597		A0A3Q2V2C8
			E	Oreochromis aureus	OREAU15366		A0A668VM14
			E	Hippocampus comes	HIPCM14131		A0A3Q2XRB2
			E	Esox lucius	ESOLU40700		A0A3P8Y560
			E	Salmo salar	SALSA49729		ENSSSAG00000090729.1
			E	Salmo trutta	SALTR34642		A0A674ET82
			E	Astyanax mexicanus	ASTMX12597		ENSAMXG00000011339
			E	Pygocentrus nattereri	PYGNA07791		A0A3B4DN08
			E	Electrophorus electricus	ELEEL12356		A0A4W4GH47
			E	Ictalurus punctatus	ICTPU12744		A0A2D0T5V8
			E	Sinocyclocheilus grahami	SINGR41462		A0A672RCA1

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