Pairwise Orthologs for RATNO38005

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene RATNO38005 (A0A0H2UHD2)

E Rattus norvegicus | PCNA-interacting partner [Parpbp]

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Branchiostoma lanceolatum	BRALA01545		BL07818
			E	Scyliorhinus torazame	SCYTO07008		A0A401NLF1
			E	Chiloscyllium punctatum	CHIPU16045		A0A401T4Y9
			E	Callorhinchus milii	CALMI18945		A0A4W3I7P2
			E	Lepisosteus oculatus	LEPOC16224		W5NDG6
			E	Anguilla anguilla	ANGAN26426		XP_035280769
			E	Anabas testudineus	ANATE02645		ENSATEG00000022956.1
			E	Seriola dumerili	SERDU03578		A0A3B4UYD9
			E	Cynoglossus semilaevis	CYNSE28601		A0A3P8V4D8
			E	Scophthalmus maximus	SCOMX21408		A0A2U9B324
			E	Dicentrarchus labrax	DICLA51772		A0A8C4IDH8
			E	Gasterosteus aculeatus	GASAC21728		G3Q9B2
			E	Sparus aurata	SPAAU49017		A0A671WBM8
			E	Mola mola	MOLML00525		A0A3Q4AWC2
			E	Takifugu rubripes	TAKRU18528		H2UIF1
			E	Tetraodon nigroviridis	TETNG07378		H3D548
			E	Oryzias javanicus	ORYJA05520		A0A3S2PAN7
			E	Oryzias latipes	ORYLA11205		ENSORLG00000016457
			E	Oryzias melastigma	ORYME26636		A0A3B3CZU3
			E	Nothobranchius furzeri	NOTFU01812		A0A1A8AAB4
			E	Kryptolebias marmoratus	KRYMA07326		A0A3Q3AL55
			E	Cyprinodon variegatus	CYPVA00809		A0A3Q2FYG0
			E	Poecilia formosa	POEFO07897		A0A087YJ55
			E	Poecilia reticulata	POERE20875		A0A3P9NLB2
			E	Xiphophorus maculatus	XIPMA11966		M4ASE3

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