Pairwise Orthologs for RATNO35732

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Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene RATNO35732 (A6JEB2)

E Rattus norvegicus | SNW domain-containing protein 1 [Snw1]

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This entry is not the isoform used for orthologs inferences, orthologs below are inferred using the entry isoform RATNO35733.

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Acanthamoeba castellanii str. Neff	ACACA10239		L8GU49
			E	Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500)	POLPP07843		D3AY53
			E	Dictyostelium discoideum	DICDI00970		SNWA_DICDI
			E	Tieghemostelium lacteum	TIELA05493		A0A151Z407
			E	Thecamonas trahens ATCC 50062	THETB05920		A0A0L0DCB1
			E	Guillardia theta	GUITH22031		EKX52513
			E	Guillardia theta (strain CCMP2712)	GUITC02901		L1JWN7
			E	Trypanosoma cruzi (strain CL Brener)	TRYCC17572		A0A2V2WDD9
			E	Naegleria fowleri	NAEFO11516		A0A6A5BF69
			E	Naegleria gruberi strain NEG-M	NAEGR08970		D2VK41
			E	Diacronema lutheri	DIALT07025		A0A8J5XK21
			E	Emiliania huxleyi CCMP1516	EMIHU10619		R1EWT2
			E	Monosiga brevicollis	MONBE03907		A9UY20
			E	Salpingoeca rosetta (strain ATCC 50818 / BSB-021)	SALR500232		F2TVX2
			E	Capsaspora owczarzaki (strain ATCC 30864)	CAPO305192		CAOG_01836
			E	Neolecta irregularis (strain DAH-3)	NEOID00971		A0A1U7LGL8
			E	Pneumocystis murina (strain B123)	PNEMU00988		M7NNJ7
			E	Schizosaccharomyces cryophilus (strain OY26 / ATCC MYA-4695 / CBS 11777 / NBRC 106824 / NRRL Y48691)	SCHCR03027		S9X2L5
			E	Schizosaccharomyces japonicus (strain yFS275 / FY16936)	SCHJY02568		B6K4X3
			E	Schizosaccharomyces octosporus (strain yFS286)	SCHOY00274		S9RI40
			E	Schizosaccharomyces pombe (strain 972 / ATCC 24843)	SCHPO04706		PRP45_SCHPO
			E	Protomyces lactucaedebilis	PROLT04855		A0A1Y2F7Y0
			E	Saitoella complicata (strain BCRC 22490 / CBS 7301 / JCM 7358 / NBRC 10748 / NRRL Y-17804)	SAICN03374		A0A0E9NGV9
			E	Dactylellina haptotyla (strain CBS 200.50)	DACHA04013		S8BEJ7
			E	Arthrobotrys oligospora (strain ATCC 24927 / CBS 115.81 / DSM 1491)	ARTOA06451		G1X2H5

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