Pairwise Orthologs for RATNO34593

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene RATNO34593 (Q4V7D9)

E Rattus norvegicus | Acid sphingomyelinase-like phosphodiesterase [Smpdl3b]

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			B	Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / BCRC 80197 / JCM 7670 / NBRC 15755 / NCIMB 13165 / 161)	ACIC502579		ACP_2727
			B	Desulfococcus oleovorans (strain DSM 6200 / JCM 39069 / Hxd3)	DESOH01735		Dole_1746
			E	Trypanosoma vivax (strain Y486)	TRYVY06767		G0TTY8
			E	Trypanosoma congolense (strain IL3000)	TRYCI03937		F9WEE1
			E	Trypanosoma brucei brucei (strain 927/4 GUTat10.1)	TRYB204706		Q580D9
			E	Gibberella moniliformis (strain M3125 / FGSC 7600)	GIBM705917		FVEG_08180
			E	Fusarium oxysporum f. sp. lycopersici (strain 4287 / CBS 123668 / FGSC 9935 / NRRL 34936)	FUSO409401		FOXG_01806
			E	Dacryopinax primogenitus (strain DJM 731)	DACPD04869		M5FVI2
			E	Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880)	RHIO913821		I1CKY8
			E	Rhizopus oryzae	RHIOR13340		RO3G_13829
			E	Branchiostoma lanceolatum	BRALA16660		BL95628
			E	Petromyzon marinus	PETMA06230		S4RXS8
			E	Eptatretus burgeri	EPTBU04479		A0A8C4RB49
			E	Chiloscyllium punctatum	CHIPU18927		A0A401RQN8
			E	Callorhinchus milii	CALMI18000		A0A4W3JQP0
			E	Lepisosteus oculatus	LEPOC14491		W5M6L3
			E	Anguilla anguilla	ANGAN00169		XP_035270030
			E	Anabas testudineus	ANATE07706		A0A7N6B4D6
			E	Seriola dumerili	SERDU21533		A0A3B4U551
			E	Echeneis naucrates	ECHNA25899		A0A665SWS5
			E	Cynoglossus semilaevis	CYNSE05647		A0A3P8WTI4
			E	Scophthalmus maximus	SCOMX15775		ENSSMAG00000005250.1
			E	Dicentrarchus labrax	DICLA14441		A0A8C4F827
			E	Gasterosteus aculeatus	GASAC13927		G3PL85
			E	Sparus aurata	SPAAU59629		A0A671WSK0

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