Pairwise Orthologs for RATNO30001

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene RATNO30001 (A0A0G2JSJ3)

E Rattus norvegicus | Solute carrier family 2, facilitated glucose trans [Slc2a3]

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			A	Vulcanisaeta moutnovskia (strain 768-28)	VULM702240		VMUT_2264
			B	Brucella anthropi (strain ATCC 49188 / DSM 6882 / CCUG 24695 / JCM 21032 / LMG 3331 / NBRC 15819 / NCTC 12168 / Alc 37)	BRUA401696		A0A7T4I9Q9
			B	Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)	SALPB05347		SPAB_05564
			B	Shewanella loihica (strain ATCC BAA-1088 / PV-4)	SHELP02670		Shew_2681
			E	Cavenderia fasciculata (strain SH3)	CAVFA09740		F4Q7R7
			E	Seriola dumerili	SERDU27009		A0A3B4TE72
			E	Cynoglossus semilaevis	CYNSE13326		A0A3P8WK51
			E	Scophthalmus maximus	SCOMX18999		ENSSMAG00000012273.1
			E	Oryzias javanicus	ORYJA35246		ENSOJAG00000003050.1
			E	Haplochromis burtoni	HAPBU17777		A0A3Q2VXL3
			E	Amphilophus citrinellus	AMPCI15887		A0A3Q0QXM1
			E	Gadus morhua	GADMO03418		A0A8C5A4S2
			E	Pygocentrus nattereri	PYGNA25032		A0A3B4DBA9
			E	Electrophorus electricus	ELEEL18515		A0A4W4HJG8
			E	Latimeria chalumnae	LATCH06302		H3AFS5
			E	Ornithorhynchus anatinus	ORNAN31261		F7DR38
			E	Tachyglossus aculeatus	TACAU26647		XP_038623915
			E	Loxodonta africana	LOXAF14137		G3SU91
			E	Oryctolagus cuniculus	RABIT12350		GTR3_RABIT
			E	Dipodomys ordii	DIPOR19535		ENSDORG00000024664.1
			E	Fukomys damarensis	FUKDA20249		ENSFDAG00000010185.1
			E	Heterocephalus glaber	HETGA17551		ENSHGLG00100001581.1
			E	Octodon degus	OCTDE08874		A0A6P3VB18
			E	Jaculus jaculus	JACJA20453		A0A8C5KEK3
			E	Cricetulus griseus	CRIGR20247		G3I4Q0

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