Pairwise Orthologs for RATNO20155

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene RATNO20155 (D3ZCM9)

E Rattus norvegicus | Dynein axonemal assembly factor 3 [Dnaaf3]

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Chiloscyllium punctatum	CHIPU12577		A0A401SV25
			E	Callorhinchus milii	CALMI41499		V9KLX2
			E	Seriola dumerili	SERDU05010		A0A3B4VNB7
			E	Scophthalmus maximus	SCOMX12399		A0A2U9CNR8
			E	Takifugu rubripes	TAKRU23846		A0A674MB94
			E	Hippocampus comes	HIPCM14330		A0A3Q3DL24
			E	Ictalurus punctatus	ICTPU13344		A0A2D0SZT6
			E	Cyprinus carpio carpio	CYPCA130213		A0A8C1A5S1
			E	Sinocyclocheilus grahami	SINGR32424		A0A672S786
			E	Ornithorhynchus anatinus	ORNAN01521		K7EGM8
			E	Tachyglossus aculeatus	TACAU11564		XP_038608403
			E	Procavia capensis	PROCA11248		ENSPCAG00000003288
			E	Loxodonta africana	LOXAF18249		G3TD23
			E	Dipodomys ordii	DIPOR22723		ENSDORG00000011578.2
			E	Cavia porcellus	CAVPO19206		H0VDT4
			E	Octodon degus	OCTDE26122		ENSODEG00000010996.1
			E	Jaculus jaculus	JACJA24775		A0A8C5KI89
			E	Mus musculus	MOUSE54220		DAAF3_MOUSE
			E	Nannospalax galili	NANGA19541		A0A8C6W3W5
			E	Ictidomys tridecemlineatus	ICTTR03152		ENSSTOG00000005561
			E	Cercocebus atys	CERAT26233		A0A2K5P5M9
			E	Chlorocebus sabaeus	CHLSB16210		A0A0D9S5Y2
			E	Macaca mulatta	MACMU19995		A0A1D5RBD7
			E	Macaca nemestrina	MACNE21221		A0A2K6D0L8
			E	Mandrillus leucophaeus	MANLE21788		A0A2K5ZE19

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