Pairwise Orthologs for RATNO14848

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Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene RATNO14848 (A0A8I5ZPJ4)

E Rattus norvegicus | Signal-induced proliferation-associated 1 like 2 [Sipa1l2]

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This entry is not the isoform used for orthologs inferences, orthologs below are inferred using the entry isoform RATNO14846.

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Branchiostoma floridae	BRAFL01581		A0A9J7L4S3
			E	Eptatretus burgeri	EPTBU06072		A0A8C4WRM1
			E	Chiloscyllium punctatum	CHIPU12887		A0A401SVW7
			E	Callorhinchus milii	CALMI17433		A0A4W3I3Y0
			E	Lepisosteus oculatus	LEPOC05137		W5NFU8
			E	Anguilla anguilla	ANGAN05603		XP_035261957
			E	Anabas testudineus	ANATE09170		A0A3Q1JYG7
			E	Seriola dumerili	SERDU12424		A0A3B4TET7
			E	Echeneis naucrates	ECHNA11265		A0A665WNJ7
			E	Cynoglossus semilaevis	CYNSE05303		A0A3P8W4X4
			E	Scophthalmus maximus	SCOMX08386		ENSSMAG00000010775.1
			E	Dicentrarchus labrax	DICLA02603		A0A8C4NZ67
			E	Gasterosteus aculeatus	GASAC09789		G3NJF7
			E	Sparus aurata	SPAAU10220		A0A671VMI8
			E	Mola mola	MOLML01457		A0A3Q3WAJ5
			E	Tetraodon nigroviridis	TETNG06064		H3D7D4
			E	Oryzias javanicus	ORYJA46443		ENSOJAG00000021531.1
			E	Oryzias latipes	ORYLA05243		ENSORLG00000012766
			E	Oryzias melastigma	ORYME08799		A0A3B3DT13
			E	Nothobranchius furzeri	NOTFU04212		A0A1A8UN95
			E	Kryptolebias marmoratus	KRYMA16151		A0A3Q3ARJ2
			E	Cyprinodon variegatus	CYPVA10969		A0A3Q2FFN0
			E	Gambusia affinis	GAMAF03745		ENSGAFG00000004793.1
			E	Poecilia formosa	POEFO05735		A0A087YN45
			E	Poecilia reticulata	POERE09528		A0A3P9NSD7

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