Pairwise Orthologs for RATNO13306

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene RATNO13306 (A0A0G2JYF2)

E Rattus norvegicus | RCG46920, isoform CRA_a | Zinc finger protein 475 [Zfp474]

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Eptatretus burgeri	EPTBU00510		A0A8C4QAQ8
			E	Chiloscyllium punctatum	CHIPU02916		A0A401S2A6
			E	Callorhinchus milii	CALMI24811		A0A4W3J5D8
			E	Latimeria chalumnae	LATCH05681		H3A0S4
			E	Ornithorhynchus anatinus	ORNAN31782		F6VFX2
			E	Loxodonta africana	LOXAF19971		G3TY19
			E	Oryctolagus cuniculus	RABIT09255		ENSOCUG00000003318.3
			E	Cricetulus griseus	CRIGR22545		ENSCGRG00000006080.1
			E	Mus musculus	MOUSE24244		ZN474_MOUSE
			E	Ictidomys tridecemlineatus	ICTTR07557		ENSSTOG00000016374
			E	Chlorocebus sabaeus	CHLSB10885		A0A0D9S9F6
			E	Macaca mulatta	MACMU39078		F7HIF5
			E	Papio anubis	PAPAN32420		A0A8I5R2K9
			E	Rhinopithecus roxellana	RHIRO32606		A0A2K6R1D8
			E	Gorilla gorilla gorilla	GORGO32809		G3QYR1
			E	Homo sapiens	HUMAN80430		ZN474_HUMAN
			E	Pan paniscus	PANPA32383		A0A2R8ZTB8
			E	Pan troglodytes	PANTR35995		A0A2I3TQ63
			E	Pongo abelii	PONAB28919		H2PGD1
			E	Cebus imitator	CEBIM12915		A0A2K5RIM2
			E	Saimiri boliviensis boliviensis	SAIBB01484		A0A2K6SPP8
			E	Propithecus coquereli	PROCO05176		A0A2K6EK20
			E	Otolemur garnettii	OTOGA03410		H0XJF6
			E	Bos indicus x Bos taurus	BOBOX25730		A0A4W2D9J4
			E	Bos taurus	BOVIN33102		ZN474_BOVIN

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