Pairwise Orthologs for RATNO10124

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene RATNO10124 (UBP54_RAT)

E Rattus norvegicus | Inactive ubiquitin carboxyl-terminal hydrolase 54 [Usp54]

‹

This entry is not the isoform used for orthologs inferences, orthologs below are inferred using the entry isoform RATNO10122.

Loading, please wait...

Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Latimeria chalumnae	LATCH07232		H3AKN5
			E	Ornithorhynchus anatinus	ORNAN17674		F6Q6Q7
			E	Tachyglossus aculeatus	TACAU03597		XP_038599525
			E	Procavia capensis	PROCA12430		ENSPCAG00000005894
			E	Loxodonta africana	LOXAF15749		G3T7M5
			E	Oryctolagus cuniculus	RABIT06694		G1U044
			E	Ochotona princeps	OCHPR13367		ENSOPRG00000002888
			E	Dipodomys ordii	DIPOR15938		ENSDORG00000007728.2
			E	Heterocephalus glaber	HETGA08972		ENSHGLG00100007980.1
			E	Cavia porcellus	CAVPO08499		H0VBE2
			E	Chinchilla lanigera	CHILA10426		A0A8C2VJT9
			E	Octodon degus	OCTDE01844		ENSODEG00000014254.1
			E	Jaculus jaculus	JACJA09351		A0A8C5KIM8
			E	Mus musculus	MOUSE13538		UBP54_MOUSE
			E	Nannospalax galili	NANGA13859		A0A8C6WBJ1
			E	Ictidomys tridecemlineatus	ICTTR00260		ENSSTOG00000026728
			E	Cercocebus atys	CERAT10348		A0A2K5M5W4
			E	Chlorocebus sabaeus	CHLSB17804		A0A0D9R8W4
			E	Macaca fascicularis	MACFA42643		ENSMFAG00000001363.1
			E	Macaca mulatta	MACMU46057		H9FQJ9
			E	Macaca nemestrina	MACNE09837		A0A2K6CN59
			E	Mandrillus leucophaeus	MANLE07162		A0A2K5YXF4
			E	Papio anubis	PAPAN04250		A0A096P4N0
			E	Colobus angolensis palliatus	COLAP05315		A0A2K5KDW8
			E	Rhinopithecus bieti	RHIBE11624		A0A2K6LSJ9

Showing 1 to 25 of 25 rows rows per page