Pairwise Orthologs for PRIPA23842

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene PRIPA23842 (WBGene00113649)

E Pristionchus pacificus

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Monosiga brevicollis	MONBE06700		A9V0D7
			E	Salpingoeca rosetta (strain ATCC 50818 / BSB-021)	SALR505929		F2UD36
			E	Scyliorhinus torazame	SCYTO08542		A0A401PC26
			E	Chiloscyllium punctatum	CHIPU05481		A0A401S9S2
			E	Echeneis naucrates	ECHNA35883		A0A665UDB1
			E	Dicentrarchus labrax	DICLA37460		A0A8P4FZV8
			E	Gasterosteus aculeatus	GASAC12714		G3PDK5
			E	Sparus aurata	SPAAU68198		A0A2D1CHA1
			E	Takifugu rubripes	TAKRU27722		A0A3B5KK05
			E	Oryzias latipes	ORYLA06567		ENSORLG00000008554
			E	Oryzias melastigma	ORYME26081		ENSOMEG00000005341.1
			E	Nothobranchius furzeri	NOTFU26735		A0A1A7ZHV9
			E	Kryptolebias marmoratus	KRYMA20690		A0A3Q2ZHG1
			E	Salarias fasciatus	SALFA44162		A0A672I4S8
			E	Astatotilapia calliptera	ASTCA16545		A0A3P8P5P2
			E	Neolamprologus brichardi	NEOBR23383		A0A3Q4I3Y3
			E	Amphilophus citrinellus	AMPCI07656		A0A3Q0T007
			E	Amphiprion ocellaris	AMPOC31495		A0A3Q1CTP5
			E	Amphiprion percula	AMPPE18436		A0A3P8S1Z3
			E	Esox lucius	ESOLU07468		A0A3P8YW52
			E	Salmo trutta	SALTR41915		A0A674EPT7
			E	Astyanax mexicanus	ASTMX00497		A0A8B9LIE3
			E	Ictalurus punctatus	ICTPU15786		A0A2D0TA54
			E	Danio rerio	DANRE38609		Q3B750
			E	Procavia capensis	PROCA07305		ENSPCAG00000005582

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