Pairwise Orthologs for POPTR33044

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene POPTR33044 (B9GY71)

E Populus trichocarpa | AP2/ERF domain-containing protein

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Capsicum annuum	CAPAN10366		A0A2G2YW81
			E	Oryza glaberrima	ORYGL31232		I1QEI8
			E	Oryza nivara	ORYNI31888		A0A0E0I2P5
			E	Oryza rufipogon	ORYRU32566		A0A0E0QA81
			E	Oryza sativa subsp. indica	ORYSI31887		A2YMX7
			E	Oryza sativa subsp. japonica	ORYSJ29153		A0A0P0X850
			E	Sorghum bicolor	SORBI15010		A0A921RTB3
			E	Chenopodium quinoa	CHEQI20389		A0A803N5N6
			E	Daucus carota subsp. sativus	DAUCS29288		A0A166GTG4
			E	Nicotiana attenuata	NICAT01105		A0A1J6HV54
			E	Solanum lycopersicum	SOLLC07338		A0A3Q7E7F1
			E	Quercus lobata	QUELO22980		A0A7N2KLH2
			E	Ricinus communis	RICCO29022		XP_015582636
			E	Prunus dulcis	PRUDU13872		A0A4Y1RIZ2
			E	Prunus persica	PRUPE14780		M5WFH4
			E	Rosa chinensis	ROSCH33354		A0A2P6QNI2
			E	Arabis alpina	ARAAL18300		A0A087G8L3
			E	Arabidopsis lyrata	ARALY21720		scaffold_602074.1
			E	Arabidopsis thaliana	ARATH34324		RA211_ARATH
			E	Eutrema salsugineum	EUTSA05488		V4LHX7
			E	Theobroma cacao	THECC27834		A0A061GS04
			E	Corchorus capsularis	COCAP09842		A0A1R3IET6
			E	Gossypium arboreum	GOSAR02997		XP_017646534
			E	Gossypium raimondii	GOSRA17156		A0A0D2VJP1
			E	Eucalyptus grandis	EUCGR18051		A0A059D8K7

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