Pairwise Orthologs for PINTA04429

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene PINTA04429 (PTA00066424)

E Pinus taeda

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Aegilops tauschii	AEGTA25799		EMT15728
			E	Helianthus annuus	HELAN50293		A0A251TXM9
			E	Populus trichocarpa	POPTR45071		Potri.007G004700.3.v
			E	Theobroma cacao	THECC00826		A0A061DPH5
			E	Welwitschia mirabilis	WELMI00406		W.mirabilis.24587
			E	Glycine max	SOYBN68493		A0A368UHS9
			E	Physcomitrium patens	PHYPA11869		EDQ61946
			E	Physcomitrium patens	PHYPA24898		EDQ75576
			E	Physcomitrium patens	PHYPA29359		PP1S13_59V6
			E	Ginkgo biloba	GINBI20035		evm.TU.chr6.1668
			E	Ginkgo biloba	GINBI20036		evm.TU.chr6.1669
			E	Ginkgo biloba	GINBI20038		evm.TU.chr6.1671
			E	Ginkgo biloba	GINBI20043		evm.TU.chr6.1676
			E	Ginkgo biloba	GINBI20044		evm.TU.chr6.1677
			E	Ginkgo biloba	GINBI20045		evm.TU.chr6.1678
			E	Oryza brachyantha	ORYBR29399		J3MWS0
			E	Oryza brachyantha	ORYBR29404		J3MWS5
			E	Oryza brachyantha	ORYBR03271		J3L538
			E	Oryza brachyantha	ORYBR03275		J3L542
			E	Oryza brachyantha	ORYBR29401		J3MWS2
			E	Oryza brachyantha	ORYBR21602		J3M919
			E	Oryza brachyantha	ORYBR29405		J3MWS7
			E	Oryza brachyantha	ORYBR29414		J3MWT6
			E	Oryza brachyantha	ORYBR29386		J3MWQ7
			E	Oryza brachyantha	ORYBR21600		J3M917

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