Pairwise Orthologs for PHACI23539

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene PHACI23539 (ENSPCIG00000003191.1)

E Phascolarctos cinereus

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Petromyzon marinus	PETMA04894		S4R630
			E	Procavia capensis	PROCA07913		ENSPCAG00000014792
			E	Loxodonta africana	LOXAF11837		G3UAD5
			E	Echinops telfairi	ECHTE05364		ENSETEG00000015716
			E	Oryctolagus cuniculus	RABIT13775		ENSOCUG00000003437.3
			E	Dipodomys ordii	DIPOR13225		ENSDORG00000011507.2
			E	Fukomys damarensis	FUKDA19705		A0A091CWW6
			E	Heterocephalus glaber	HETGA26989		ENSHGLG00100003734.1
			E	Cavia porcellus	CAVPO11689		H0V910
			E	Chinchilla lanigera	CHILA22097		A0A8C2UNC7
			E	Octodon degus	OCTDE15464		ENSODEG00000000697.1
			E	Jaculus jaculus	JACJA18551		A0A8C5P1Z0
			E	Cricetulus griseus	CRIGR18185		ENSCGRG00000003032.1
			E	Mus musculus	MOUSE65039		B1AZR7
			E	Rattus norvegicus	RATNO44553		A0A8I6AKA9
			E	Nannospalax galili	NANGA05082		A0A8C6W4D0
			E	Ictidomys tridecemlineatus	ICTTR02420		ENSSTOG00000015482
			E	Cercocebus atys	CERAT33090		A0A2K5KKX1
			E	Chlorocebus sabaeus	CHLSB18638		A0A0D9RDH0
			E	Macaca fascicularis	MACFA44736		ENSMFAG00000030468.1
			E	Macaca mulatta	MACMU47346		A0A1D5Q352
			E	Macaca nemestrina	MACNE32526		A0A2K6CG80
			E	Mandrillus leucophaeus	MANLE20985		A0A2K6AAF8
			E	Papio anubis	PAPAN42597		A0A2I3NFB7
			E	Colobus angolensis palliatus	COLAP15619		A0A2K5I0P7

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