Pairwise Orthologs for PHACI20161

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene PHACI20161 (ENSPCIG00000023171.1)

E Phascolarctos cinereus

‹

Loading, please wait...

Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Callorhinchus milii	CALMI36998		A0A4W3K1H2
			E	Lepisosteus oculatus	LEPOC15635		W5N5D4
			E	Anabas testudineus	ANATE11074		A0A3Q1HI38
			E	Seriola dumerili	SERDU00873		A0A3B4U716
			E	Cynoglossus semilaevis	CYNSE16155		A0A3P8UIX8
			E	Scophthalmus maximus	SCOMX11317		ENSSMAG00000006976.1
			E	Dicentrarchus labrax	DICLA04670		XP_051243896
			E	Gasterosteus aculeatus	GASAC06229		G3NT25
			E	Sparus aurata	SPAAU05207		A0A671XD25
			E	Mola mola	MOLML08363		A0A3Q3VP43
			E	Oryzias javanicus	ORYJA29949		ENSOJAG00000020127.1
			E	Oryzias melastigma	ORYME09851		A0A3B3CF86
			E	Nothobranchius furzeri	NOTFU25783		A0A9D3BBA9
			E	Kryptolebias marmoratus	KRYMA00679		A0A3Q3AV19
			E	Cyprinodon variegatus	CYPVA19039		A0A3Q2CYC9
			E	Poecilia formosa	POEFO04539		A0A087XTR7
			E	Poecilia reticulata	POERE19868		A0A3P9QDP4
			E	Xiphophorus maculatus	XIPMA14434		M3ZWG8
			E	Salarias fasciatus	SALFA11358		A0A672I515
			E	Astatotilapia calliptera	ASTCA18605		A0A3P8NK36
			E	Haplochromis burtoni	HAPBU04055		A0A3Q2WW55
			E	Neolamprologus brichardi	NEOBR06104		A0A3Q4GD17
			E	Oreochromis niloticus	ORENI32073		I3K2K1
			E	Amphilophus citrinellus	AMPCI07961		A0A3Q0S3F9
			E	Amphiprion ocellaris	AMPOC16092		A0A3Q1DBS8

Showing 1 to 25 of 25 rows rows per page