Pairwise Orthologs for PHACI14253

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene PHACI14253 (ENSPCIG00000003366.1)

E Phascolarctos cinereus

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			B	Luteitalea pratensis	LUTPR00307		atsA_2
			B	Brachybacterium faecium (strain ATCC 43885 / DSM 4810 / JCM 11609 / LMG 19847 / NBRC 14762 / NCIMB 9860 / 6-10)	BRAFD02689		Bfae_28180
			B	Streptomyces clavuligerus	STRCL01385		EFG04880
			B	Synechococcus sp. (strain JA-3-3Ab)	SYNJA02346		CYA_2481
			B	Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB)	SYNFM02125		WP_011699007
			B	Paenibacillus sp. (strain JDR-2)	PAESJ03231		Pjdr2_3275
			B	Candidatus Eisenbacteria bacterium Zod_Metabat.137	UC03700277		JW958_12635
			E	Alternaria alternata	ALTAL10768		A0A177D9B0
			E	Rosellinia necatrix	ROSNE04625		A0A1W2TIY1
			E	Heterobasidion annosum	HETAN08389		e_gw1.4.189.1
			E	Ornithorhynchus anatinus	ORNAN07139		A0A6I8N0D1
			E	Tachyglossus aculeatus	TACAU16783		XP_038613058
			E	Loxodonta africana	LOXAF01096		G3TUY4
			E	Cercocebus atys	CERAT03889		A0A2K5MSP4
			E	Chlorocebus sabaeus	CHLSB18251		A0A0D9RSQ3
			E	Macaca fascicularis	MACFA43749		ENSMFAG00000038297.1
			E	Macaca mulatta	MACMU47111		F7A5R8
			E	Macaca nemestrina	MACNE09299		A0A2K6DL60
			E	Mandrillus leucophaeus	MANLE13311		A0A2K5YSZ7
			E	Papio anubis	PAPAN00266		A0A096MY07
			E	Colobus angolensis palliatus	COLAP39320		A0A2K5IAL9
			E	Rhinopithecus bieti	RHIBE42188		A0A2K6KZL4
			E	Rhinopithecus roxellana	RHIRO34429		A0A2K6QPD1
			E	Gorilla gorilla gorilla	GORGO44575		G3RHG7
			E	Homo sapiens	HUMAN99624		ARSF_HUMAN

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