Pairwise Orthologs for PHACI06135

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene PHACI06135 (ENSPCIG00000014436.1)

E Phascolarctos cinereus

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Heterocephalus glaber	HETGA01365		G5C2M5
			E	Cavia aperea	CAVAP04648		ENSCAPG00000003992.1
			E	Cavia porcellus	CAVPO07019		H0W5W8
			E	Cricetulus griseus	CRIGR12658		G3HL36
			E	Mus musculus	MOUSE47768		B9EII2
			E	Rattus norvegicus	RATNO30281		F1LS99
			E	Chlorocebus sabaeus	CHLSB10127		A0A0D9SCT1
			E	Macaca mulatta	MACMU30977		A0A5F8ABP2
			E	Gorilla gorilla gorilla	GORGO37857		G3QLM2
			E	Homo sapiens	HUMAN91835		T2R60_HUMAN
			E	Pan paniscus	PANPA37453		T2R60_PANPA
			E	Pongo abelii	PONAB33326		H2PNW3
			E	Otolemur garnettii	OTOGA10485		H0X9F2
			E	Tupaia belangeri	TUPBE08441		ENSTBEG00000010334
			E	Bos indicus x Bos taurus	BOBOX16466		A0A4W2D3D8
			E	Bos taurus	BOVIN28652		A0A3Q1N090
			E	Capra hircus	CAPHI23189		A0A452DRA3
			E	Ovis aries	SHEEP15853		W5NT30
			E	Sus scrofa	PIGXX12328		A0A8D1G893
			E	Rhinolophus ferrumequinum	RHIFE11854		A0A671EKA0
			E	Ceratotherium simum simum	CERSS16484		XP_014643259
			E	Monodelphis domestica	MONDO33855		Q2AB85
			E	Notamacropus eugenii	NOTEU12893		ENSMEUG00000015970
			E	Xenopus tropicalis	XENTR25569		Q2AB68
			E	Pan troglodytes	PANTR41675		T2R60_PANTR

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