Pairwise Orthologs for PELSI03979

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene PELSI03979 (K7F891)

E Pelodiscus sinensis | CD109 molecule [CD109]

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			B	Koribacter versatilis (strain Ellin345)	KORVE00925		WP_011521733
			B	Fimbriimonas ginsengisoli	FIMGI01114		OP10G_1114
			B	Armatimonadetes bacterium AS09scLD_344	U01AM03366		GX785_04880
			B	Armatimonadetes bacterium Ch1	U03AM00523		HPY44_14310
			B	bacterium MAG-57	UC08901632		H5T88_06555
			B	Spirochaetes bacterium Zod_Metabat.1289	U02SP00810		JW827_04120
			B	Turneriella parva (strain ATCC BAA-1111 / DSM 21527 / NCTC 11395 / H)	TURPD03092		WP_014804313
			B	Spirochaetes bacterium Go_SlDig_bin_244	U04SP03131		KA369_02895
			B	Thermosipho africanus (strain TCF52B)	THEAB00599		WP_012579686
			B	bacterium ADurb.Bin236	UC15700618		BWY28_00626
			B	Pedosphaera parvula (strain Ellin514)	PEDPL05458		Cflav_PD0948
			E	Anaeramoeba ignava	ANAIG06749		A0A9Q0LMX6
			E	Branchiostoma floridae	BRAFL16842		A0A9J7MU02
			E	Petromyzon marinus	PETMA00738		S4RX82
			E	Chiloscyllium punctatum	CHIPU15260		A0A401T2J1
			E	Lepisosteus oculatus	LEPOC00902		W5NJS3
			E	Anabas testudineus	ANATE31973		ENSATEG00000000953.1
			E	Seriola dumerili	SERDU02284		A0A3B4UE28
			E	Echeneis naucrates	ECHNA30572		A0A665UQP5
			E	Cynoglossus semilaevis	CYNSE27038		A0A3P8V2E1
			E	Scophthalmus maximus	SCOMX18018		ENSSMAG00000007989.1
			E	Dicentrarchus labrax	DICLA18229		XP_051264948
			E	Sparus aurata	SPAAU61981		A0A671W345
			E	Mola mola	MOLML26626		A0A3Q3XBM7
			E	Takifugu rubripes	TAKRU34961		H2TQ57

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