Pairwise Orthologs for PATVU08176

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene PATVU08176 (XP_050397802)

E Patella vulgata

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Capitella teleta	CAPTE06985		R7VKU6
			E	Capitella sp. 1	CAPI125436		estExt_fgenesh1_pg.C
			E	Mya arenaria	MYAAR45432		XP_052772980
			E	Mercenaria mercenaria	MERMC29847		XP_045189122
			E	Tegillarca granosa	TEGGR15542		KUTeg_004973
			E	Ostrea edulis	OSTED52529		XP_048748157
			E	Pecten maximus	PECMA26056		XP_033756808
			E	Octopus bimaculoides	OCTBM04281		A0A0L8HCI0
			E	Pomacea canaliculata	POMCA17847		A0A2T7PB77
			E	Physella acuta	PHYAT00648		BaRGS_018450
			E	Biomphalaria glabrata	BIOGL02462		A0A9W3ASE6
			E	Biomphalaria pfeifferi	BIOPF22855		LOC101851374
			E	Aplysia californica	APLCA09641		LOC124116780
			E	Gigantopelta aegis	GIGAE24429		XP_041370074
			E	Haliotis rufescens	HALRU60683		PoB_006068300
			E	Echinococcus granulosus	ECHGR06842		W6UHY3
			E	Echinococcus multilocularis	ECHMU04266		A0A068Y559
			E	Klebsormidium flaccidum	KLEFL13875		KFL_000030020
			E	Klebsormidium nitens	KLENI15887		A0A1Y1HL75
			E	Picea sitchensis	PICSI04512		B8LPD8
			E	Crassostrea gigas	CRAGI20034		A0A8W8IQ55
			E	Crassostrea gigas	CRAGI20126		A0A8W8IQI1
			E	Chara braunii	CHABU07207		A0A388K7C8
			E	Chara braunii	CHABU07216		A0A388K7D4
			E	Physcomitrium patens	PHYPA03246		A0A2K1IDS2

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