Pairwise Orthologs for PANTR28315

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene PANTR28315 (H2QIF4)

E Pan troglodytes | ALF transcription elongation factor 3 [AFF3]

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			B	Frankia alni (strain ACN14a)	FRAAA01863		FRAAL1923
			E	Ajellomyces capsulatus (strain H143)	AJECH09077		C6HS96
			E	Ajellomyces capsulatus (strain H88)	AJEC808403		F0UTG1
			E	Ajellomyces capsulatus (strain NAm1 / WU24)	AJECN03302		A6R0Z6
			E	Schizophyllum commune	SCHCO00663		augustus-scaffold_5.
			E	Schizophyllum commune (strain H4-8 / FGSC 9210)	SCHCM06657		D8Q3T6
			E	Callorhinchus milii	CALMI04797		A0A4W3GCN6
			E	Latimeria chalumnae	LATCH09756		H3ALQ3
			E	Ornithorhynchus anatinus	ORNAN13248		A0A6I8PHM1
			E	Tachyglossus aculeatus	TACAU21134		XP_038617865
			E	Procavia capensis	PROCA15746		ENSPCAG00000010889
			E	Loxodonta africana	LOXAF10830		G3TAA3
			E	Echinops telfairi	ECHTE12760		ENSETEG00000012540
			E	Oryctolagus cuniculus	RABIT08305		ENSOCUG00000009532.3
			E	Ochotona princeps	OCHPR12128		ENSOPRG00000004372
			E	Dipodomys ordii	DIPOR11942		ENSDORG00000007294.2
			E	Cavia aperea	CAVAP08330		ENSCAPG00000012999.1
			E	Cavia porcellus	CAVPO11352		H0V7K8
			E	Chinchilla lanigera	CHILA17233		A0A8C2WCF0
			E	Octodon degus	OCTDE11448		ENSODEG00000007806.1
			E	Jaculus jaculus	JACJA21779		A0A8C5KDQ9
			E	Cricetulus griseus	CRIGR11203		ENSCGRG00000003408.1
			E	Mus musculus	MOUSE30009		AFF3_MOUSE
			E	Rattus norvegicus	RATNO44020		A0A0G2K1Y7
			E	Nannospalax galili	NANGA08909		A0A8C6QFR7

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