Pairwise Orthologs for PANTR16228

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene PANTR16228 (A0A2I3SFF1)

E Pan troglodytes | ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltra | ST8SIA5 isoform 4 [ST8SIA5]

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Branchiostoma floridae	BRAFL29274		A0A9J7M3W3
			E	Eptatretus burgeri	EPTBU12571		A0A8C4QRA9
			E	Scyliorhinus torazame	SCYTO21272		A0A401QAC6
			E	Chiloscyllium punctatum	CHIPU12167		A0A401STT8
			E	Callorhinchus milii	CALMI46820		A0A4W3GW73
			E	Lepisosteus oculatus	LEPOC07333		W5MZG6
			E	Anguilla anguilla	ANGAN46801		XP_035246888
			E	Anabas testudineus	ANATE10591		ENSATEG00000013959.1
			E	Seriola dumerili	SERDU30313		A0A3B4VSD8
			E	Echeneis naucrates	ECHNA51626		A0A665W333
			E	Cynoglossus semilaevis	CYNSE08924		A0A3P8UHM6
			E	Scophthalmus maximus	SCOMX09864		ENSSMAG00000008655.1
			E	Dicentrarchus labrax	DICLA20195		A0A8C4E5I8
			E	Gasterosteus aculeatus	GASAC04657		G3PUJ1
			E	Sparus aurata	SPAAU34807		A0A671XM62
			E	Mola mola	MOLML06620		A0A3Q3WA76
			E	Takifugu rubripes	TAKRU44202		A0A674NAD0
			E	Tetraodon nigroviridis	TETNG10862		H3CLU9
			E	Oryzias javanicus	ORYJA07087		A0A3S2MF19
			E	Oryzias latipes	ORYLA02485		ENSORLG00000005048
			E	Oryzias melastigma	ORYME18758		A0A3B3DBC9
			E	Nothobranchius furzeri	NOTFU03471		A0A8C6KT34
			E	Kryptolebias marmoratus	KRYMA04494		A0A3Q3AGL3
			E	Cyprinodon variegatus	CYPVA12411		A0A3Q2DKM7
			E	Gambusia affinis	GAMAF03408		ENSGAFG00000012928.1

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