Pairwise Orthologs for ORYSJ27406

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene ORYSJ27406 (Q0D956)

E Oryza sativa subsp. japonica | Os07g0106100 protein [B1317D11.118] [P0617C02.123]

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Oryza brachyantha	ORYBR24679	1:1	J3MI16
			E	Oryza glaberrima	ORYGL23238	1:1	I1Q7E8
			E	Oryza longistaminata	ORYLO20918	1:1	KN539027.1_FG014
			E	Oryza nivara	ORYNI04902	1:1	A0A0E0FXY7
			E	Oryza punctata	ORYPU25700	1:1	A0A0E0LG51
			E	Oryza rufipogon	ORYRU30523	1:1	A0A0E0Q363
			E	Brachypodium distachyon	BRADI05787	1:1	I1H4F0
			E	Hordeum vulgare subsp. vulgare	HORVV38335	1:1	A0A8I6WU92
			E	Aegilops tauschii	AEGTA15803	1:1	EMT07436
			E	Aegilops tauschii subsp. strangulata	AEGTS11590	1:1	A0A453BQ65
			E	Triticum urartu	TRIUA31074	1:1	M7Z2W5
			E	Sorghum bicolor	SORBI10676	1:1	A0A1B6Q8K5
			E	Zea mays	MAIZE74601	1:1	A0A1D6HR35
			E	Setaria italica	SETIT03992	1:1	K3ZR25
			E	Setaria viridis	SETVI12432	1:1	A0A4U6VMT0
			E	Triticum aestivum	WHEAT35456	1:n	A0A3B6DG05
			E	Triticum aestivum	WHEAT27904	1:n	A0A3B6C5T9
			E	Triticum aestivum	WHEAT20279	1:n	A0A3B6AZ47
			E	Triticum turgidum subsp. durum	TRITD29512	1:n	A0A9R1RM19
			E	Triticum turgidum subsp. durum	TRITD103332	1:n	A0A9R1NTP3
			E	Eragrostis tef	ERATE16111	1:n	maker-scaffold3209-a
			E	Eragrostis tef	ERATE20639	1:n	maker-scaffold3472-a
			E	Miscanthus sinensis	MISSI18990	1:n	Misin04G008000.v7.1
			E	Miscanthus sinensis	MISSI14323	1:n	Misin03G032800.v7.1

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