Pairwise Orthologs for ORYLO25519

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene ORYLO25519 (KN538792.1_FG009)

E Oryza longistaminata

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			B	Acaryochloris marina (strain MBIC 11017)	ACAM100870		WP_012161566
			E	Physcomitrium patens	PHYPA13662		A9SYV2
			E	Marchantia polymorpha	MARPO23161		A0A2R6WI51
			E	Ceratopteris richardii	CERRI51580		A0A8T2RJ84
			E	Marsilea vestita	MARVE19883		Mvestita_S7g18117.1
			E	Welwitschia mirabilis	WELMI08321		W.mirabilis.13676
			E	Picea sitchensis	PICSI04410		PSI00004408
			E	Taxus chinensis	TAXCH28939		A0AA38FZY6
			E	Amborella trichopoda	AMBTC14030		W1PUZ4
			E	Zostera marina	ZOSMR13474		A0A0K9P859
			E	Asparagus officinalis	ASPOF20381		A0A5P1E6V0
			E	Oryza brachyantha	ORYBR08628		J3NCS7
			E	Oryza glaberrima	ORYGL08020		I1R5Q8
			E	Oryza nivara	ORYNI10983		A0A0E0J9A9
			E	Oryza punctata	ORYPU09165		A0A0E0MLJ5
			E	Oryza rufipogon	ORYRU10981		A0A0E0RG71
			E	Oryza sativa subsp. indica	ORYSI10521		B8BP79
			E	Zea mays	MAIZE78970		A0A1D6I9E0
			E	Setaria viridis	SETVI38322		A0A4U6VFV1
			E	Musa acuminata subsp. malaccensis	MUSAM03176		A0A804KC05
			E	Persea americana	PERAE06114		MRB53_006128
			E	Annona cherimola	ANNCH41529		Anche102Scf0013g0000
			E	Magnolia sinica	MAGSI37814		XP_058078072
			E	Aristolochia fimbriata	ARIFI12892		H6P81_012892
			E	Nelumbo nucifera	NELNU04348		A0A1U7ZK05

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