Pairwise Orthologs for ORYJA28357

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene ORYJA28357 (ENSOJAG00000018942.1)

E Oryzias javanicus

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Grifola frondosa	GRIFR07105		A0A1C7MDL1
			E	Anguilla anguilla	ANGAN21869		XP_035277462
			E	Anabas testudineus	ANATE26841		ENSATEG00000007168.1
			E	Seriola dumerili	SERDU13868		A0A3B4V575
			E	Echeneis naucrates	ECHNA33964		A0A665WRU7
			E	Cynoglossus semilaevis	CYNSE18925		A0A3P8VTA0
			E	Scophthalmus maximus	SCOMX28980		ENSSMAG00000019815.1
			E	Dicentrarchus labrax	DICLA01395		XP_051260733
			E	Gasterosteus aculeatus	GASAC09558		G3Q1A3
			E	Sparus aurata	SPAAU36277		A0A671VR28
			E	Mola mola	MOLML19445		A0A3Q3X1Y8
			E	Takifugu rubripes	TAKRU33413		A0A674NPA3
			E	Tetraodon nigroviridis	TETNG14155		H3CSW7
			E	Oryzias latipes	ORYLA07022		ENSORLG00000017409
			E	Oryzias melastigma	ORYME25323		A0A3B3BJS1
			E	Nothobranchius furzeri	NOTFU14781		LOC107383886
			E	Kryptolebias marmoratus	KRYMA17370		A0A3Q3A9F4
			E	Gambusia affinis	GAMAF10015		ENSGAFG00000021418.1
			E	Poecilia formosa	POEFO04299		A0A087Y9U6
			E	Xiphophorus maculatus	XIPMA31670		A0A3B5QT19
			E	Salarias fasciatus	SALFA34295		A0A672IBE1
			E	Astatotilapia calliptera	ASTCA16070		A0A3P8QGI7
			E	Haplochromis burtoni	HAPBU00207		A0A3Q2V4K1
			E	Neolamprologus brichardi	NEOBR06411		A0A3Q4MNZ3
			E	Oreochromis aureus	OREAU17454		A0A668UC80

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