Pairwise Orthologs for ORYGL12935

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene ORYGL12935 (I1P8Q0)

E Oryza glaberrima | RING-type domain-containing protein

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Asparagus officinalis	ASPOF18499		A0A5P1FBX1
			E	Oryza brachyantha	ORYBR13802		J3LL76
			E	Oryza longistaminata	ORYLO27356		KN538728.1_FG007
			E	Oryza nivara	ORYNI17102		A0A0E0GIQ7
			E	Oryza sativa subsp. indica	ORYSI16589		A2XDR0
			E	Oryza sativa subsp. japonica	ORYSJ15480		A3AFA5
			E	Brachypodium distachyon	BRADI06945		I1H8D3
			E	Hordeum vulgare subsp. vulgare	HORVV101975		HORVU4Hr1G069450
			E	Aegilops tauschii subsp. strangulata	AEGTS30438		A0A453IQI3
			E	Eragrostis tef	ERATE02208		maker-scaffold17489-
			E	Sorghum bicolor	SORBI09533		A0A921V1K2
			E	Setaria italica	SETIT34444		K4ADQ4
			E	Setaria viridis	SETVI46401		A0A4U6TAI7
			E	Musa acuminata subsp. malaccensis	MUSAM19109		A0A804JKQ1
			E	Persea americana	PERAE12597		MRB53_012611
			E	Annona cherimola	ANNCH18350		Anche102Chr4g0054700
			E	Magnolia sinica	MAGSI40851		XP_058081095
			E	Aristolochia fimbriata	ARIFI20389		H6P81_020389
			E	Macadamia integrifolia	MACIN20050		XP_042506870
			E	Macleaya cordata	MACCD18552		A0A200R301
			E	Tetracentron sinense	TETSI30363		A0A834Y8M1
			E	Helianthus annuus	HELAN20843		A0A251RYH5
			E	Cynara cardunculus var. scolymus	CYNCS23103		A0A103XM96
			E	Erythranthe guttata	ERYGU09671		XP_012836869
			E	Solanum lycopersicum	SOLLC11002		A0A3Q7ETG3

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