Pairwise Orthologs for MOUSE65050

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene MOUSE65050 (Q8CCR8)

E Mus musculus | Claudin 34C1 [Cldn34c1]

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This entry is not the isoform used for orthologs inferences, orthologs below are inferred using the entry isoform MOUSE65049.

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Takifugu rubripes	TAKRU26905		H2U2T9
			E	Tetraodon nigroviridis	TETNG00542		H3C1M1
			E	Kryptolebias marmoratus	KRYMA15560		A0A3Q3ARK0
			E	Poecilia formosa	POEFO18542		A0A087YSP7
			E	Poecilia reticulata	POERE25566		A0A3P9PXZ6
			E	Xiphophorus maculatus	XIPMA35493		M4AZT4
			E	Hippocampus comes	HIPCM01701		A0A3Q2Y0H4
			E	Salmo salar	SALSA45561		A0A1S3MPL7
			E	Danio rerio	DANRE39434		E7FDA9
			E	Latimeria chalumnae	LATCH00584		M3XHP4
			E	Tachyglossus aculeatus	TACAU16761		XP_038613431
			E	Homo sapiens	HUMAN99687		CLD34_HUMAN
			E	Pan paniscus	PANPA40850		A0A2R8ZI17
			E	Pan troglodytes	PANTR45465		A0A2I3TJQ9
			E	Callithrix jacchus	CALJA46777		A0A8I3WC11
			E	Balaenoptera musculus	BALMU05609		A0A8C0E2V8
			E	Canis lupus familiaris	CANLF19548		A0A8C0RG35
			E	Mustela putorius furo	MUSPF10767		M3Z5M2
			E	Ursus americanus	URSAM29153		A0A452SPX3
			E	Ursus maritimus	URSMA24270		A0A452TDQ3
			E	Felis catus	FELCA38925		A0A5F5XZV8
			E	Ceratotherium simum simum	CERSS29440		XP_014651006
			E	Falco tinnunculus	FALTI09457		A0A8C4UZC6
			E	Meleagris gallopavo	MELGA01450		ENSMGAG00000015479
			E	Gallus gallus	CHICK06311		XP_015129218

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