Pairwise Orthologs for MOUSE56729

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Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene MOUSE56729 (Q3U7K7)

E Mus musculus | RING-type E3 ubiquitin transferase [Trim21]

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This entry is not the isoform used for orthologs inferences, orthologs below are inferred using the entry isoform MOUSE56728.

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Anabas testudineus	ANATE25603		A0A3Q1H1Z2
			E	Cyprinodon variegatus	CYPVA13055		A0A3Q2FMJ1
			E	Poecilia reticulata	POERE29508		A0A3P9NA68
			E	Salarias fasciatus	SALFA01510		A0A672I6K0
			E	Salmo salar	SALSA120161		ENSSSAG00000040509.2
			E	Procavia capensis	PROCA02982	1:1	ENSPCAG00000004445
			E	Ochotona princeps	OCHPR04002	1:1	ENSOPRG00000014479
			E	Dipodomys ordii	DIPOR06812	1:1	ENSDORG00000007305.2
			E	Fukomys damarensis	FUKDA12759	1:1	ENSFDAG00000007764.1
			E	Heterocephalus glaber	HETGA19104	1:1	ENSHGLG00100005369.1
			E	Cavia aperea	CAVAP16249	1:1	ENSCAPG00000006289.1
			E	Cavia porcellus	CAVPO22089	1:1	H0VKV8
			E	Chinchilla lanigera	CHILA03870	1:1	A0A8C2YTP0
			E	Octodon degus	OCTDE20194	1:1	ENSODEG00000008000.1
			E	Jaculus jaculus	JACJA01888	1:1	A0A8C5KUI4
			E	Cricetulus griseus	CRIGR26430	1:1	G3ILU9
			E	Rattus norvegicus	RATNO16743	1:1	D4ACF2
			E	Nannospalax galili	NANGA19236	1:1	A0A8C6QDI6
			E	Ictidomys tridecemlineatus	ICTTR04828	1:1	ENSSTOG00000004965
			E	Cercocebus atys	CERAT17575	1:1	A0A2K5LKX8

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