Pairwise Orthologs for MOUSE25115

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene MOUSE25115 (VLDLR_MOUSE)

E Mus musculus | Very low-density lipoprotein receptor [Vldlr]

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Branchiostoma floridae	BRAFL33944		A0A9J7NCN6
			E	Branchiostoma lanceolatum	BRALA01343		BL05139
			E	Petromyzon marinus	PETMA08710		S4RRP8
			E	Scyliorhinus torazame	SCYTO20433		A0A401Q0F9
			E	Chiloscyllium punctatum	CHIPU01795		A0A401RZ29
			E	Callorhinchus milii	CALMI14625		A0A4W3HPG6
			E	Lepisosteus oculatus	LEPOC07473		W5N449
			E	Anguilla anguilla	ANGAN48632		XP_035247328
			E	Anabas testudineus	ANATE30739		ENSATEG00000005643.1
			E	Seriola dumerili	SERDU17451		A0A3B4T9A8
			E	Echeneis naucrates	ECHNA51750		A0A665WVK6
			E	Cynoglossus semilaevis	CYNSE07403		A0A3P8UNQ5
			E	Scophthalmus maximus	SCOMX09171		ENSSMAG00000013317.1
			E	Dicentrarchus labrax	DICLA21130		A0A8C4ILG8
			E	Gasterosteus aculeatus	GASAC05020		G3Q188
			E	Sparus aurata	SPAAU33573		A0A671WR61
			E	Mola mola	MOLML07082		A0A3Q3WU24
			E	Takifugu rubripes	TAKRU43965		H2SFR2
			E	Tetraodon nigroviridis	TETNG15866		H3C4E3
			E	Oryzias javanicus	ORYJA05957		ENSOJAG00000005002.1
			E	Oryzias latipes	ORYLA02973		H2MJ58
			E	Oryzias melastigma	ORYME33085		A0A3B3DAP4
			E	Nothobranchius furzeri	NOTFU03817		A0A1A8V836
			E	Kryptolebias marmoratus	KRYMA27666		A0A3Q3FLF7
			E	Cyprinodon variegatus	CYPVA19941		A0A3Q2GDD7

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