Pairwise Orthologs for MOUSE03519

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene MOUSE03519 (NR1D1_MOUSE)

E Mus musculus | Nuclear receptor subfamily 1 group D member 1 [Nr1d1]

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Callorhinchus milii	CALMI46193		A0A4W3GU06
			E	Anguilla anguilla	ANGAN55216		XP_035253724
			E	Anabas testudineus	ANATE29480		ENSATEG00000014679.1
			E	Seriola dumerili	SERDU29895		A0A3B4UUM4
			E	Sparus aurata	SPAAU01081		A0A671W4X8
			E	Nothobranchius furzeri	NOTFU29178		A0A8C6P3B2
			E	Kryptolebias marmoratus	KRYMA28327		A0A3Q3APF3
			E	Cyprinodon variegatus	CYPVA23105		A0A3Q2E5X0
			E	Gambusia affinis	GAMAF31180		ENSGAFG00000000414.1
			E	Poecilia formosa	POEFO17782		A0A087XRX2
			E	Poecilia reticulata	POERE32703		A0A3P9P998
			E	Xiphophorus maculatus	XIPMA10576		M4AWZ5
			E	Salarias fasciatus	SALFA22114		A0A672F8G1
			E	Astatotilapia calliptera	ASTCA29377		A0A3P8Q038
			E	Haplochromis burtoni	HAPBU30179		A0A3Q2X7E3
			E	Oreochromis aureus	OREAU51254		A0A668SYI9
			E	Amphilophus citrinellus	AMPCI30591		A0A3Q0SRE5
			E	Amphiprion ocellaris	AMPOC23972		A0A3Q1BKR3
			E	Amphiprion percula	AMPPE11112		A0A3P8SGG7
			E	Gadus morhua	GADMO38403		A0A8C5CCR4
			E	Esox lucius	ESOLU32821		A0A3P8YEI0
			E	Astyanax mexicanus	ASTMX16041		A0A8B9RJG0
			E	Pygocentrus nattereri	PYGNA03350		A0A3B4E325
			E	Electrophorus electricus	ELEEL02492		A0A4W4E6U3
			E	Ictalurus punctatus	ICTPU24819		A0A2D0Q2Q6

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