Pairwise Orthologs for MONDO33314

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene MONDO33314 (F6VKW8)

E Monodelphis domestica | Semaphorin-3C [SEMA3C]

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Scyliorhinus torazame	SCYTO01496		A0A401PDS3
			E	Chiloscyllium punctatum	CHIPU11151		A0A401SQU9
			E	Callorhinchus milii	CALMI12031		A0A4W3JA08
			E	Lepisosteus oculatus	LEPOC16558		W5NGI4
			E	Anabas testudineus	ANATE02531		ENSATEG00000020923.1
			E	Seriola dumerili	SERDU03657		A0A3B4V690
			E	Echeneis naucrates	ECHNA42168		A0A665VMV4
			E	Cynoglossus semilaevis	CYNSE28803		A0A3P8V870
			E	Scophthalmus maximus	SCOMX21360		ENSSMAG00000004196.1
			E	Dicentrarchus labrax	DICLA51700		A0A8P4KQK9
			E	Gasterosteus aculeatus	GASAC21690		G3Q900
			E	Sparus aurata	SPAAU48935		A0A671WR29
			E	Mola mola	MOLML00580		A0A3Q4AAD4
			E	Takifugu rubripes	TAKRU18732		A0A674MGZ2
			E	Tetraodon nigroviridis	TETNG07419		H3BZ87
			E	Oryzias javanicus	ORYJA05108		ENSOJAG00000020832.1
			E	Oryzias latipes	ORYLA11175		ENSORLG00000016082
			E	Oryzias melastigma	ORYME26588		A0A3B3D3E1
			E	Nothobranchius furzeri	NOTFU01768		A0A1A7ZJE2
			E	Kryptolebias marmoratus	KRYMA07282		A0A3Q3AFL4
			E	Cyprinodon variegatus	CYPVA22809		A0A3Q2G8C8
			E	Gambusia affinis	GAMAF24526		ENSGAFG00000016930.1
			E	Poecilia formosa	POEFO07863		A0A087YFW0
			E	Poecilia reticulata	POERE20569		A0A3P9QFI3
			E	Xiphophorus maculatus	XIPMA11858		A0A3B5R8J2

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