Pairwise Orthologs for MONDO12338

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene MONDO12338 (A0A5F8H6E8)

E Monodelphis domestica | Plasminogen [PLG]

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Branchiostoma floridae	BRAFL00957		A0A9J7N3Z3
			E	Eptatretus burgeri	EPTBU21728		A0A8C4NMQ2
			E	Callorhinchus milii	CALMI00257		A0A4W3H402
			E	Lepisosteus oculatus	LEPOC00397		W5NFF8
			E	Anguilla anguilla	ANGAN24607		XP_035279789
			E	Anabas testudineus	ANATE31867		ENSATEG00000022051.1
			E	Seriola dumerili	SERDU01371		A0A3B4THQ6
			E	Echeneis naucrates	ECHNA30841		A0A665V532
			E	Cynoglossus semilaevis	CYNSE27006		A0A3P8V360
			E	Scophthalmus maximus	SCOMX17918		ENSSMAG00000004711.1
			E	Dicentrarchus labrax	DICLA17919		XP_051265717
			E	Gasterosteus aculeatus	GASAC06933		G3NR28
			E	Sparus aurata	SPAAU61413		A0A671V3J7
			E	Mola mola	MOLML23038		A0A3Q3XDI1
			E	Takifugu rubripes	TAKRU14698		H2TA21
			E	Tetraodon nigroviridis	TETNG04854		H3C6P0
			E	Oryzias javanicus	ORYJA01286		ENSOJAG00000022291.1
			E	Oryzias latipes	ORYLA18669		ENSORLG00000020532
			E	Oryzias melastigma	ORYME33054		A0A3B3CM08
			E	Nothobranchius furzeri	NOTFU07195		A0A8C6NIG9
			E	Cyprinodon variegatus	CYPVA05768		A0A3Q2D697
			E	Gambusia affinis	GAMAF01894		ENSGAFG00000005960.1
			E	Poecilia formosa	POEFO18134		A0A096LUY1
			E	Poecilia reticulata	POERE18339		A0A3P9PXJ7
			E	Xiphophorus maculatus	XIPMA07969		M3ZTS0

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